Struct Gene 

pub struct Gene {
    pub source_id: String,
    pub start: i64,
    pub end: i64,
    pub strand: Strand,
    pub protein: Protein,
    pub qualifiers: BTreeMap<String, Vec<String>>,
    pub probability: Option<f64>,
}

A nucleotide sequence coding a protein.

Fields

source_id: String

Source sequence identifier.

start: i64

Start coordinate within source (1-based, inclusive).

end: i64

End coordinate within source (inclusive).

strand: Strand

protein: Protein

qualifiers: BTreeMap<String, Vec<String>>

probability: Option<f64>

Override probability (takes precedence over domain-derived probability).

Implementations

impl Gene

pub fn id(&self) -> &str

pub fn average_probability(&self) -> Option<f64>

Average of domain probabilities (or override if set).

pub fn maximum_probability(&self) -> Option<f64>

Highest domain probability (or override if set).

pub fn functions(&self) -> HashSet<String>

Gene functions from GO term annotations.

pub fn with_protein(&self, protein: Protein) -> Gene

pub fn with_probability(&self, probability: f64) -> Gene

Trait Implementations

impl Clone for Gene

fn clone(&self) -> Gene

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Gene

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Gene

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Gene

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.