Struct Gene 

pub struct Gene {
    pub source_id: String,
    pub start: i64,
    pub end: i64,
    pub strand: Strand,
    pub protein: Protein,
    pub qualifiers: BTreeMap<String, Vec<String>>,
    pub probability: Option<f64>,
}

A nucleotide sequence coding a protein.

Fields

source_id: String

The identifier of the DNA sequence this gene was found in.

start: i64

The index of the leftmost nucleotide of the gene within the source sequence, independent of the strandedness.

end: i64

The index of the rightmost nucleotide of the gene within the source sequence.

strand: Strand

The strand where the gene is located.

protein: Protein

The protein translated from this gene.

qualifiers: BTreeMap<String, Vec<String>>

Feature qualifiers added to the GenBank CDS feature built from this Gene.

probability: Option<f64>

Per-gene cluster probability override; if set, takes precedence over per-domain probabilities when computing average_probability and maximum_probability.

Implementations

impl Gene

pub fn id(&self) -> &str

The identifier of the gene (same as the protein identifier).

pub fn average_probability(&self) -> Option<f64>

The average of domain probabilities of being in a cluster.

pub fn maximum_probability(&self) -> Option<f64>

The highest of domain probabilities of being in a cluster.

pub fn functions(&self) -> HashSet<String>

Predict the function(s) of the gene from its domain annotations.

pub fn with_protein(&self, protein: Protein) -> Gene

Copy the current gene and assign it a different protein.

pub fn with_probability(&self, probability: f64) -> Gene

Copy the current gene and assign it a different probability.

Trait Implementations

impl Clone for Gene

fn clone(&self) -> Gene

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Gene

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Gene

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Gene

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.