Struct SeqfileOptions 

pub struct SeqfileOptions {
    pub tax_root: PathBuf,
    pub user_root: PathBuf,
    pub seq_src: SeqSrc,
}

Fields

tax_root: PathBuf

Root of the per-taxonomy sequence tree, e.g. <seq-dir>/Bacteria. Used for rev/, unrev/, rxn/ resolution.

user_root: PathBuf

Separate root for user/ files — gapseq’s R code hard-codes this to the built-in <gapseq>/dat/seq/<tax>/ regardless of -D (prepare_batch_alignments.R:217). Typically the same as tax_root unless the caller passed an override seqdb.

seq_src: SeqSrc

Trait Implementations

impl Clone for SeqfileOptions

fn clone(&self) -> SeqfileOptions

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SeqfileOptions

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.