Struct ReactionHit 

pub struct ReactionHit {

    pub pathway: String,
    pub pathway_status: Option<PwyStatus>,
    pub rxn: String,
    pub name: String,
    pub ec: String,
    pub keyrea: bool,
    pub spont: bool,
    pub is_complex: bool,
    pub subunit_count: u32,
    pub subunits: String,
    pub complex: Option<String>,
    pub subunits_found: Option<u32>,
    pub subunit_undefined_found: Option<bool>,
    pub complex_status: Option<u8>,
    pub file: Option<String>,
    pub dbhit: String,
    pub has_dbhit: bool,
    pub src: String,
    pub reftype: String,
    pub qseqid: Option<String>,
    pub pident: Option<f32>,
    pub evalue: Option<f64>,
    pub bitscore: Option<f32>,
    pub qcov: Option<f32>,
    pub stitle: Option<String>,
    pub sstart: Option<i32>,
    pub send: Option<i32>,
    pub exception: bool,
    pub status: HitStatus,
}

One row of the Reactions.tbl output, carrying both the reaction metadata (pathway, name, EC, keyrea, spont) and the best blast hit for the reaction (if any). Mirrors src/analyse_alignments.R’s rxndt.

Column order matches the golden output at toy/ecoli-all-Reactions.tbl so downstream tools (R’s generate_GSdraft.R, predict_medium.R, etc.) parse it unchanged.

Fields

pathway: String

pathway_status: Option<PwyStatus>

rxn: String

name: String

ec: String

keyrea: bool

spont: bool

is_complex: bool

subunit_count: u32

subunits: String

complex: Option<String>

subunits_found: Option<u32>

subunit_undefined_found: Option<bool>

complex_status: Option<u8>

file: Option<String>

The originating reference fasta path (e.g. rev/1.1.1.1.fasta) or None if no fasta was found.

dbhit: String

Space-joined, sorted, deduplicated SEED reaction IDs associated with this reaction via EC / MetaCyc-id / enzyme-name lookups. Matches gapseq’s dbhit column exactly (see src/getDBhit.R). Empty when no SEED reaction matches.

has_dbhit: bool

True when dbhit is non-empty. Not written to output; handy for downstream consumers.

src: String

Source subdirectory (rxn, rev, unrev, user) derived from file. Empty when no fasta was found.

reftype: String

Reference-sequence type (EC, metacyc, reaName). Empty when no fasta was found.

qseqid: Option<String>

pident: Option<f32>

evalue: Option<f64>

bitscore: Option<f32>

qcov: Option<f32>

stitle: Option<String>

sstart: Option<i32>

send: Option<i32>

exception: bool

status: HitStatus

Trait Implementations

impl Clone for ReactionHit

fn clone(&self) -> ReactionHit

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReactionHit

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for ReactionHit

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for ReactionHit

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.