Struct FindOptions 

pub struct FindOptions<'a> {

    pub keyword: &'a str,
    pub match_mode: MatchMode,
    pub exclude_superpathways: bool,
    pub only_active: bool,
    pub bitcutoff: f32,
    pub identcutoff: f32,
    pub ident_exception: f32,
    pub coverage_pct: u32,
    pub vague_cutoff: f32,
    pub completeness_hint_off: f32,
    pub completeness_hint_on: f32,
    pub strict_candidates: bool,
    pub subunit_cutoff: f32,
    pub valid_tax_ids: &'a [String],
}

Fields

keyword: &'a str

match_mode: MatchMode

exclude_superpathways: bool

only_active: bool

bitcutoff: f32

identcutoff: f32

ident_exception: f32

coverage_pct: u32

Coverage cutoff passed through to the aligner. Not re-checked in classification — we trust the aligner to filter.

vague_cutoff: f32

Fraction-of-reactions threshold above which vague (no_seq_data) reactions dilute completeness. Matches the vagueCutoff arg in analyse_alignments.R.

completeness_hint_off: f32

Main completeness threshold, 0–1 (e.g. 0.80).

completeness_hint_on: f32

Relaxed threshold applied when all key reactions are present, 0–1.

strict_candidates: bool

subunit_cutoff: f32

Fraction of known subunits needed for a complex to count as present (0–1). Default 0.5.

valid_tax_ids: &'a [String]

Tax IDs kept when filtering by taxrange. Empty → no filter.

Trait Implementations

impl<'a> Clone for FindOptions<'a>

fn clone(&self) -> FindOptions<'a>

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl<'a> Debug for FindOptions<'a>

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'a> Default for FindOptions<'a>

fn default() -> Self

Returns the “default value” for a type.