Struct DataRoot

Source

pub struct DataRoot {Show 17 fields
    pub root: PathBuf,
    pub seed_rxns: Vec<SeedRxnRow>,
    pub seed_cpds: Vec<SeedCpdRow>,
    pub mnxref_seed: Vec<MnxrefSeed>,
    pub mnxref_seed_other: Vec<MnxrefSeedOther>,
    pub meta_pwy: PathwayTable,
    pub kegg_pwy: PathwayTable,
    pub seed_pwy: PathwayTable,
    pub custom_pwy: PathwayTable,
    pub medium_rules: Vec<MediumRule>,
    pub complex_subunit: ComplexSubunitTable,
    pub subex: Vec<SubexRow>,
    pub tcdb_substrates: Vec<TcdbSubstrateRow>,
    pub exception: Vec<ExceptionRow>,
    pub biomass_gram_pos: Option<BiomassTemplate>,
    pub biomass_gram_neg: Option<BiomassTemplate>,
    pub biomass_archaea: Option<BiomassTemplate>,
}

Expand description

The full set of reference tables gapseq consults. Fields are populated lazily as the relevant loaders are called; DataRoot::load loads everything at once.

Fields§

§root: PathBuf§seed_rxns: Vec<SeedRxnRow>§seed_cpds: Vec<SeedCpdRow>§mnxref_seed: Vec<MnxrefSeed>§mnxref_seed_other: Vec<MnxrefSeedOther>§meta_pwy: PathwayTable§kegg_pwy: PathwayTable§seed_pwy: PathwayTable§custom_pwy: PathwayTable§medium_rules: Vec<MediumRule>§complex_subunit: ComplexSubunitTable§subex: Vec<SubexRow>§tcdb_substrates: Vec<TcdbSubstrateRow>§exception: Vec<ExceptionRow>§biomass_gram_pos: Option<BiomassTemplate>§biomass_gram_neg: Option<BiomassTemplate>§biomass_archaea: Option<BiomassTemplate>

Struct DataRoot Copy item path

Fields§

Implementations§

impl DataRoot

pub fn load(root: impl AsRef<Path>) -> Result<Self, DbError>

Trait Implementations§

impl Default for DataRoot

fn default() -> DataRoot

Auto Trait Implementations§

impl Freeze for DataRoot

impl RefUnwindSafe for DataRoot

impl Send for DataRoot

impl Sync for DataRoot

impl Unpin for DataRoot

impl UnsafeUnpin for DataRoot

impl UnwindSafe for DataRoot

Blanket Implementations§

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

fn in_current_span(self) -> Instrumented<Self>

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self>where S: Into<Dispatch>,

fn with_current_subscriber(self) -> WithDispatch<Self>

Struct DataRoot

impl<T> Any for T
where T: 'static + ?Sized,

impl<T> Borrow<T> for T
where T: ?Sized,

impl<T> BorrowMut<T> for T
where T: ?Sized,

impl<T, U> Into<U> for T
where U: From<T>,

impl<T, U> TryFrom<U> for T
where U: Into<T>,

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self>
where S: Into<Dispatch>,