Struct Model 

pub struct Model {
    pub annot: ModelAnnot,
    pub compartments: Vec<Compartment>,
    pub mets: Vec<Metabolite>,
    pub rxns: Vec<Reaction>,
    pub genes: Vec<GeneId>,
    pub s: StoichMatrix,
}

Fields

annot: ModelAnnot

compartments: Vec<Compartment>

mets: Vec<Metabolite>

rxns: Vec<Reaction>

genes: Vec<GeneId>

Genes referenced by any reaction’s GPR.

s: StoichMatrix

Sparse stoichiometric matrix in CSC (one column per reaction).

Implementations

impl Model

pub fn new(id: impl Into<String>) -> Self

Empty model with the three standard compartments (c0, e0, p0).

pub fn rxn_count(&self) -> usize

pub fn met_count(&self) -> usize

pub fn rxn_index(&self) -> HashMap<RxnId, usize>

Lookup map from reaction id → index. Built on demand (O(n)); callers that need many lookups should cache the result.

pub fn met_index(&self) -> HashMap<CpdId, usize>

pub fn check_shape(&self) -> Result<(), ModelError>

Sanity-check that the stoichiometric matrix shape matches the model.

Trait Implementations

impl Clone for Model

fn clone(&self) -> Model

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Model

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Model

fn default() -> Model

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for Model

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Model

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.