Struct Reaction 

pub struct Reaction {

    pub id: RxnId,
    pub name: String,
    pub ec: Vec<String>,
    pub lb: f64,
    pub ub: f64,
    pub obj_coef: f64,
    pub gpr_raw: Option<String>,
    pub subsystem: Option<String>,
    pub seed_status: SeedStatus,
    pub is_exchange: bool,
    pub is_biomass: bool,
    pub gs_origin: Option<i8>,
    pub bitscore: Option<f32>,
    pub weight: Option<f32>,
}

Fields

id: RxnId

name: String

ec: Vec<String>

lb: f64

ub: f64

obj_coef: f64

gpr_raw: Option<String>

subsystem: Option<String>

seed_status: SeedStatus

is_exchange: bool

is_biomass: bool

gs_origin: Option<i8>

gapseq gs.origin code (see generate_GSdraft.R): 0 high-evidence SEED, 5 conditional transporter, 6 biomass, 7 exchange, 8 diffusion, 9 pathway-only.

bitscore: Option<f32>

Bitscore from homology search (NaN / None if absent).

weight: Option<f32>

pFBA weight (populated by the gap-filler).

Implementations

impl Reaction

pub fn new( id: impl Into<RxnId>, name: impl Into<String>, lb: f64, ub: f64, ) -> Self

pub fn reversibility(&self) -> Reversibility

Trait Implementations

impl Clone for Reaction

fn clone(&self) -> Reaction

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Reaction

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Reaction

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for Reaction

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.