Struct PrecomputedTsvAligner 

pub struct PrecomputedTsvAligner { /* private fields */ }

Implementations

impl PrecomputedTsvAligner

pub fn new_percentage(path: impl Into<PathBuf>) -> Self

TSV where coverage is reported 0–100 (blast / diamond convention).

pub fn new_fraction(path: impl Into<PathBuf>) -> Self

TSV where coverage is a 0–1 fraction (mmseqs2 native output).

Trait Implementations

impl Aligner for PrecomputedTsvAligner

fn name(&self) -> &'static str

Short label printed in logs ("blast", "diamond", "mmseqs2", "tblastn", "precomputed").

fn align( &self, _query_fasta: &Path, _target_fasta: &Path, _opts: &AlignOpts, ) -> Result<Vec<Hit>, AlignError>

Align query_fasta against target_fasta. The target_fasta may be a protein or nucleotide file depending on the backend — check the impl’s docs.