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Mmseqs2Aligner

gapsmith_align::mmseqs2

Struct Mmseqs2Aligner 

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pub struct Mmseqs2Aligner {
    pub sensitivity: f32,
}

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§sensitivity: f32

Sensitivity (-s). Default 5.7 — matches mmseqs’s default.

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impl Mmseqs2Aligner

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pub fn new() -> Self

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impl Aligner for Mmseqs2Aligner

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fn name(&self) -> &'static str

Short label printed in logs ("blast", "diamond", "mmseqs2", "tblastn", "precomputed").
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fn align( &self, query_fasta: &Path, target_fasta: &Path, opts: &AlignOpts, ) -> Result<Vec<Hit>, AlignError>

Align query_fasta against target_fasta. The target_fasta may be a protein or nucleotide file depending on the backend — check the impl’s docs.
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impl Default for Mmseqs2Aligner

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fn default() -> Self

Returns the “default value” for a type. Read more

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