Struct DiamondAligner 

pub struct DiamondAligner {
    pub more_sensitive: bool,
}

Fields

more_sensitive: bool

Pass --more-sensitive (default: true). Matches gapseq’s aliArgs default when the user doesn’t override -R.

Implementations

impl DiamondAligner

pub fn new() -> Self

Trait Implementations

impl Aligner for DiamondAligner

fn name(&self) -> &'static str

Short label printed in logs ("blast", "diamond", "mmseqs2", "tblastn", "precomputed").

fn align( &self, query_fasta: &Path, target_fasta: &Path, opts: &AlignOpts, ) -> Result<Vec<Hit>, AlignError>

Align query_fasta against target_fasta. The target_fasta may be a protein or nucleotide file depending on the backend — check the impl’s docs.

impl Default for DiamondAligner

fn default() -> Self

Returns the “default value” for a type.