Struct BarcodeMatcher

pub struct BarcodeMatcher { /* private fields */ }

The struct responsible for matching barcodes to a Vec of sample barcodes.

Implementations

impl BarcodeMatcher

pub fn new( sample_barcodes: &[&str], max_mismatches: u8, min_mismatch_delta: u8, use_cache: bool, ) -> Self

Instantiates a new BarcodeMatcher struct. Checks that the sample barcodes vector is not empty and that none of the barcodes provided are the empty string.

Panics

• Will panic if provided an empty vec of sample barcodes.
• Will panic if any provided barcode is length zero.

pub fn assign(&mut self, read_bases: &[u8]) -> Option<BarcodeMatch>

Assigns the barcode that best matches the provided read_bases, using internal caching if configured to do so and skipping calculation for reads that cannot match any barcode ( due to having too many no-called bases).

Trait Implementations

impl Clone for BarcodeMatcher

fn clone(&self) -> BarcodeMatcher

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BarcodeMatcher

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.