Struct fibertools_rs::fiber::FiberseqData

pub struct FiberseqData {
    pub record: Record,
    pub msp: Ranges,
    pub nuc: Ranges,
    pub m6a: Ranges,
    pub cpg: Ranges,
    pub base_mods: BaseMods,
    pub ec: f32,
    pub target_name: String,
    pub rg: String,
    pub center_position: Option<CenterPosition>,
}

Fields

record: Record

msp: Ranges

nuc: Ranges

m6a: Ranges

cpg: Ranges

base_mods: BaseMods

ec: f32

target_name: String

rg: String

center_position: Option<CenterPosition>

Implementations

impl FiberseqData

pub fn new( record: Record, target_name: Option<&String>, filters: &FiberFilters, ) -> Self

pub fn dict_from_head_view(head_view: &HeaderView) -> HashMap<i32, String>

pub fn target_name_from_tid( tid: i32, target_dict: &HashMap<i32, String>, ) -> Option<&String>

pub fn from_records( records: Vec<Record>, head_view: &HeaderView, filters: &FiberFilters, ) -> Vec<Self>

pub fn get_rq(&self) -> Option<f32>

pub fn get_hp(&self) -> String

pub fn center(&self, center_position: &CenterPosition) -> Option<Self>

Center all coordinates on the read using the offset attribute.

pub fn write_msp(&self, reference: bool) -> String

pub fn write_nuc(&self, reference: bool) -> String

pub fn write_m6a(&self, reference: bool) -> String

pub fn write_cpg(&self, reference: bool) -> String

pub fn to_bed12( &self, reference: bool, starts: &[Option<i64>], lengths: &[Option<i64>], color: &str, ) -> String

pub fn all_header(simplify: bool, quality: bool) -> String

pub fn write_all(&self, simplify: bool, quality: bool) -> String

Trait Implementations

impl Clone for FiberseqData

fn clone(&self) -> FiberseqData

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FiberseqData

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for FiberseqData

fn eq(&self, other: &FiberseqData) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for FiberseqData