Struct fibertools_rs::cli::FootprintOptions
source · pub struct FootprintOptions {
pub bam: String,
pub bed: String,
pub yaml: String,
pub out: String,
}
Fields§
§bam: String
Indexed and aligned bam file with m6A and MSP calls
bed: String
BED file with the regions to footprint. Should all contain the same motif with proper strand information, and ideally be ChIP-seq peaks.
yaml: String
yaml describing the modules of the footprint
out: String
Output bam
Trait Implementations§
source§impl Args for FootprintOptions
impl Args for FootprintOptions
source§fn augment_args<'b>(__clap_app: Command) -> Command
fn augment_args<'b>(__clap_app: Command) -> Command
source§impl Debug for FootprintOptions
impl Debug for FootprintOptions
source§impl FromArgMatches for FootprintOptions
impl FromArgMatches for FootprintOptions
source§fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>
fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>
source§fn from_arg_matches_mut(
__clap_arg_matches: &mut ArgMatches
) -> Result<Self, Error>
fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches ) -> Result<Self, Error>
source§fn update_from_arg_matches(
&mut self,
__clap_arg_matches: &ArgMatches
) -> Result<(), Error>
fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches ) -> Result<(), Error>
Assign values from
ArgMatches
to self
.source§fn update_from_arg_matches_mut(
&mut self,
__clap_arg_matches: &mut ArgMatches
) -> Result<(), Error>
fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches ) -> Result<(), Error>
Assign values from
ArgMatches
to self
.source§impl PartialEq for FootprintOptions
impl PartialEq for FootprintOptions
source§fn eq(&self, other: &FootprintOptions) -> bool
fn eq(&self, other: &FootprintOptions) -> bool
This method tests for
self
and other
values to be equal, and is used
by ==
.impl Eq for FootprintOptions
impl StructuralPartialEq for FootprintOptions
Auto Trait Implementations§
impl Freeze for FootprintOptions
impl RefUnwindSafe for FootprintOptions
impl Send for FootprintOptions
impl Sync for FootprintOptions
impl Unpin for FootprintOptions
impl UnwindSafe for FootprintOptions
Blanket Implementations§
source§impl<T> BorrowMut<T> for Twhere
T: ?Sized,
impl<T> BorrowMut<T> for Twhere
T: ?Sized,
source§fn borrow_mut(&mut self) -> &mut T
fn borrow_mut(&mut self) -> &mut T
Mutably borrows from an owned value. Read more
source§impl<Q, K> Equivalent<K> for Q
impl<Q, K> Equivalent<K> for Q
source§impl<Q, K> Equivalent<K> for Q
impl<Q, K> Equivalent<K> for Q
source§fn equivalent(&self, key: &K) -> bool
fn equivalent(&self, key: &K) -> bool
Compare self to
key
and return true
if they are equal.source§impl<T> Pointable for T
impl<T> Pointable for T
source§impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,
source§fn to_subset(&self) -> Option<SS>
fn to_subset(&self) -> Option<SS>
The inverse inclusion map: attempts to construct
self
from the equivalent element of its
superset. Read moresource§fn is_in_subset(&self) -> bool
fn is_in_subset(&self) -> bool
Checks if
self
is actually part of its subset T
(and can be converted to it).source§fn to_subset_unchecked(&self) -> SS
fn to_subset_unchecked(&self) -> SS
Use with care! Same as
self.to_subset
but without any property checks. Always succeeds.source§fn from_subset(element: &SS) -> SP
fn from_subset(element: &SS) -> SP
The inclusion map: converts
self
to the equivalent element of its superset.