Struct ValidateOptions 

pub struct ValidateOptions {
    pub bam: InputBam,
    pub reads: usize,
    pub m6a: f64,
    pub nuc: f64,
    pub fire: bool,
    pub aligned: f64,
    pub phased: f64,
    pub kinetics: f64,
}

Fields

bam: InputBam

reads: usize

Number of reads to validate

m6a: f64

The fraction of reads that must have m6A calls to pass validation

nuc: f64

The fraction of reads that must have nucleosome and MSP calls to pass validation

fire: bool

Check for FIRE calls in the reads, there must be at least one FIRE call to pass validation.

aligned: f64

Check for the fraction of reads with alignment to a reference genome

phased: f64

Check for the fraction of reads with phasing information

kinetics: f64

Check for the fraction of reads with kinetics information

Trait Implementations

impl Args for ValidateOptions

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Debug for ValidateOptions

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for ValidateOptions

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.