Struct StripBasemodsOptions 

pub struct StripBasemodsOptions {
    pub input: InputBam,
    pub out: String,
    pub basemod: Option<String>,
    pub ml_m6a: u8,
    pub ml_5mc: u8,
    pub drop_forward: bool,
    pub drop_reverse: bool,
}

Fields

input: InputBam

out: String

Output bam file

basemod: Option<String>

base modification to strip out of the bam file

ml_m6a: u8

filter out m6A modifications with less than this ML value

ml_5mc: u8

filter out 5mC modifications with less than this ML value

drop_forward: bool

Drop forward strand of base modifications

drop_reverse: bool

Drop reverse strand of base modifications

Trait Implementations

impl Args for StripBasemodsOptions

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Debug for StripBasemodsOptions

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for StripBasemodsOptions

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.