Struct NucleosomeParameters 

pub struct NucleosomeParameters {
    pub nucleosome_length: i64,
    pub combined_nucleosome_length: i64,
    pub min_distance_added: i64,
    pub distance_from_end: i64,
    pub allowed_m6a_skips: i64,
}

Fields

nucleosome_length: i64

Minium nucleosome length

combined_nucleosome_length: i64

Minium nucleosome length when combining over a single m6A

min_distance_added: i64

Minium distance needed to add to an already existing nuc by crossing an m6a

distance_from_end: i64

Minimum distance from the end of a fiber to call a nucleosome or MSP

allowed_m6a_skips: i64

Most m6A events we can skip over to get to the nucleosome length when using D-segment algorithm. 2 is often a good value, negative values disable D-segment for the simple caller.

Trait Implementations

impl Args for NucleosomeParameters

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Clone for NucleosomeParameters

fn clone(&self) -> NucleosomeParameters

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for NucleosomeParameters

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for NucleosomeParameters

fn default() -> Self

Returns the “default value” for a type.

impl FromArgMatches for NucleosomeParameters

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.