Struct fibertools_rs::basemods::BaseMods

source ·

pub struct BaseMods {
    pub base_mods: Vec<BaseMod>,
}

Fields

base_mods: Vec<BaseMod>

Implementations

source

impl BaseMods

source

pub fn new(record: &Record, min_ml_score: u8) -> BaseMods

source

pub fn drop_m6a(&mut self)

remove m6a base mods from the struct

source

pub fn add_mm_and_ml_tags(&self, record: &mut Record)

Example MM tag: MM:Z:C+m,11,6,10;A+a,0,0,0; Example ML tag: ML:B:C,157,30,2,164,118,255

Trait Implementations

source

impl Debug for BaseMods

source

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

source

impl PartialEq<BaseMods> for BaseMods

source

fn eq(&self, other: &BaseMods) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

1.0.0 · source

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason. Read more

source

impl Eq for BaseMods

source

impl StructuralEq for BaseMods

source

impl StructuralPartialEq for BaseMods

Auto Trait Implementations

impl RefUnwindSafe for BaseMods

impl Send for BaseMods

impl Sync for BaseMods

impl Unpin for BaseMods

impl UnwindSafe for BaseMods

Blanket Implementations

source

impl<T> Any for Twhere
T: 'static + ?Sized,

source

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

source

impl<T> Borrow<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

source

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

source

impl<Q, K> Equivalent<K> for Qwhere
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

source

fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

source

impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

source

impl<T, U> Into for Twhere
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> Pointable for T

const ALIGN: usize = mem::align_of::<T>()

The alignment of pointer.

type Init = T

The type for initializers.

unsafe fn init(init: <T as Pointable>::Init) -> usize

Initializes a with the given initializer. Read more

unsafe fn deref<'a>(ptr: usize) -> &'a T

Dereferences the given pointer. Read more

unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

Mutably dereferences the given pointer. Read more

unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more

source

impl<T> Same<T> for T

type Output = T

Should always be Self

impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,

fn to_subset(&self) -> Option<SS>

The inverse inclusion map: attempts to construct self from the equivalent element of its superset. Read more

fn is_in_subset(&self) -> bool

Checks if self is actually part of its subset T (and can be converted to it).

fn to_subset_unchecked(&self) -> SS

Use with care! Same as self.to_subset but without any property checks. Always succeeds.

fn from_subset(element: &SS) -> SP

The inclusion map: converts self to the equivalent element of its superset.

source

impl<T, U> TryFrom for Twhere
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

source

impl<T, U> TryInto for Twhere
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Struct fibertools_rs::basemods::BaseMods

Fields

Implementations

impl BaseMods

pub fn new(record: &Record, min_ml_score: u8) -> BaseMods

pub fn drop_m6a(&mut self)

pub fn m6a_positions(&self, reference: bool) -> Vec<i64> ⓘ

pub fn m6a_full_probabilities(&self, record: &Record) -> Vec<(i64, f32)> ⓘ

pub fn m6a(&self) -> (Vec<i64>, Vec<i64>, Vec<u8>)

pub fn cpg_positions(&self, reference: bool) -> Vec<i64> ⓘ

pub fn add_mm_and_ml_tags(&self, record: &mut Record)

Trait Implementations

impl Debug for BaseMods

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl PartialEq<BaseMods> for BaseMods

fn eq(&self, other: &BaseMods) -> bool

fn ne(&self, other: &Rhs) -> bool

impl Eq for BaseMods

impl StructuralEq for BaseMods

impl StructuralPartialEq for BaseMods

Auto Trait Implementations

impl RefUnwindSafe for BaseMods

impl Send for BaseMods

impl Sync for BaseMods

impl Unpin for BaseMods

impl UnwindSafe for BaseMods

Blanket Implementations

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<Q, K> Equivalent<K> for Qwhere Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T> Pointable for T

const ALIGN: usize = mem::align_of::<T>()

type Init = T

unsafe fn init(init: <T as Pointable>::Init) -> usize

unsafe fn deref<'a>(ptr: usize) -> &'a T

unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

unsafe fn drop(ptr: usize)

impl<T> Same<T> for T

type Output = T

impl<SS, SP> SupersetOf<SS> for SPwhere SS: SubsetOf<SP>,

fn to_subset(&self) -> Option<SS>

fn is_in_subset(&self) -> bool

fn to_subset_unchecked(&self) -> SS

fn from_subset(element: &SS) -> SP

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<V, T> VZip<V> for Twhere V: MultiLane<T>,

fn vzip(self) -> V

impl<T> Any for Twhere
T: 'static + ?Sized,

impl<T> Borrow<T> for Twhere
T: ?Sized,

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

impl<Q, K> Equivalent<K> for Qwhere
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

impl<T, U> Into<U> for Twhere
U: From<T>,

impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,

impl<T, U> TryFrom<U> for Twhere
U: Into<T>,

impl<T, U> TryInto<U> for Twhere
U: TryFrom<T>,

impl<V, T> VZip<V> for Twhere
V: MultiLane<T>,