Struct fibertools_rs::extract::FiberseqData

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pub struct FiberseqData {
    pub record: Record,
    pub nuc: Vec<(i64, i64)>,
    pub msp: Vec<(i64, i64)>,
    pub ref_nuc: Vec<(i64, i64)>,
    pub ref_msp: Vec<(i64, i64)>,
    pub base_mods: BaseMods,
    pub ec: f32,
}

Fields

record: Recordnuc: Vec<(i64, i64)>msp: Vec<(i64, i64)>ref_nuc: Vec<(i64, i64)>ref_msp: Vec<(i64, i64)>base_mods: BaseModsec: f32

Implementations

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impl FiberseqData

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pub fn new(record: &Record, min_ml_score: u8) -> Self

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pub fn from_records(records: &Vec<Record>, min_ml_score: u8) -> Vec<Self>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

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pub fn get_nuc(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

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pub fn get_msp(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

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pub fn write_all(
    &self,
    head_view: &HeaderView,
    simplify: bool,
    quality: bool
) -> String

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pub fn to_bed12(
    &self,
    reference: bool,
    starts: &[i64],
    lengths: &[i64],
    head_view: &HeaderView
) -> String

Auto Trait Implementations

impl RefUnwindSafe for FiberseqData

impl Send for FiberseqData

impl Sync for FiberseqData

impl Unpin for FiberseqData

impl UnwindSafe for FiberseqData

Blanket Implementations

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impl<T> Any for Twhere
T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for Twhere
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into for Twhere
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> Pointable for T

const ALIGN: usize = mem::align_of::<T>()

The alignment of pointer.

type Init = T

The type for initializers.

unsafe fn init(init: <T as Pointable>::Init) -> usize

Initializes a with the given initializer. Read more

unsafe fn deref<'a>(ptr: usize) -> &'a T

Dereferences the given pointer. Read more

unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

Mutably dereferences the given pointer. Read more

unsafe fn drop(ptr: usize)

Drops the object pointed to by the given pointer. Read more

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impl<T> Same<T> for T

type Output = T

Should always be Self

impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,

fn to_subset(&self) -> Option<SS>

The inverse inclusion map: attempts to construct self from the equivalent element of its superset. Read more

fn is_in_subset(&self) -> bool

Checks if self is actually part of its subset T (and can be converted to it).

fn to_subset_unchecked(&self) -> SS

Use with care! Same as self.to_subset but without any property checks. Always succeeds.

fn from_subset(element: &SS) -> SP

The inclusion map: converts self to the equivalent element of its superset.

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impl<T, U> TryFrom for Twhere
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for Twhere
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

Struct fibertools_rs::extract::FiberseqData

Fields

Implementations

impl FiberseqData

pub fn new(record: &Record, min_ml_score: u8) -> Self

pub fn from_records(records: &Vec<Record>, min_ml_score: u8) -> Vec<Self>ⓘNotable traits for Vec<u8, A>impl<A> Write for Vec<u8, A>where A: Allocator,

pub fn get_nuc(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>impl<A> Write for Vec<u8, A>where A: Allocator,

pub fn get_msp(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>impl<A> Write for Vec<u8, A>where A: Allocator,

pub fn write_msp(&self, reference: bool, head_view: &HeaderView) -> String

pub fn write_nuc(&self, reference: bool, head_view: &HeaderView) -> String

pub fn write_m6a(&self, reference: bool, head_view: &HeaderView) -> String

pub fn write_cpg(&self, reference: bool, head_view: &HeaderView) -> String

pub fn get_rq(&self) -> Option<f32>

pub fn all_header(simplify: bool, quality: bool) -> String

pub fn write_all( &self, head_view: &HeaderView, simplify: bool, quality: bool) -> String

pub fn to_bed12( &self, reference: bool, starts: &[i64], lengths: &[i64], head_view: &HeaderView) -> String

Auto Trait Implementations

impl RefUnwindSafe for FiberseqData

impl Send for FiberseqData

impl Sync for FiberseqData

impl Unpin for FiberseqData

impl UnwindSafe for FiberseqData

Blanket Implementations

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T> Pointable for T

const ALIGN: usize = mem::align_of::<T>()

type Init = T

unsafe fn init(init: <T as Pointable>::Init) -> usize

unsafe fn deref<'a>(ptr: usize) -> &'a T

unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

unsafe fn drop(ptr: usize)

impl<T> Same<T> for T

type Output = T

impl<SS, SP> SupersetOf<SS> for SPwhere SS: SubsetOf<SP>,

fn to_subset(&self) -> Option<SS>

fn is_in_subset(&self) -> bool

fn to_subset_unchecked(&self) -> SS

fn from_subset(element: &SS) -> SP

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<V, T> VZip<V> for Twhere V: MultiLane<T>,

fn vzip(self) -> V

pub fn from_records(records: &Vec<Record>, min_ml_score: u8) -> Vec<Self>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

pub fn get_nuc(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

pub fn get_msp(&self, reference: bool, get_starts: bool) -> Vec<i64>ⓘNotable traits for Vec<u8, A>`impl<A> Write for Vec<u8, A>where A: Allocator,`

pub fn write_all(
&self,
head_view: &HeaderView,
simplify: bool,
quality: bool
) -> String

pub fn to_bed12(
&self,
reference: bool,
starts: &[i64],
lengths: &[i64],
head_view: &HeaderView
) -> String

impl<T> Any for Twhere
T: 'static + ?Sized,

impl<T> Borrow<T> for Twhere
T: ?Sized,

impl<T> BorrowMut<T> for Twhere
T: ?Sized,

impl<T, U> Into<U> for Twhere
U: From<T>,

impl<SS, SP> SupersetOf<SS> for SPwhere
SS: SubsetOf<SP>,

impl<T, U> TryFrom<U> for Twhere
U: Into<T>,

impl<T, U> TryInto<U> for Twhere
U: TryFrom<T>,

impl<V, T> VZip<V> for Twhere
V: MultiLane<T>,