fhir_sdk::r5::codes

Enum GenomicStudyDataFormat

pub enum GenomicStudyDataFormat {
Show 40 variants    Bam,
    Bed,
    Bedgraph,
    Bedpe,
    BigWig,
    Bigbed,
    BirdsuiteFiles,
    Broadpeak,
    Cbs,
    ChemicalReactivityProbingProfiles,
    ChromSizes,
    Cn,
    Cram,
    CustomFileFormats,
    Cytoband,
    Fasta,
    Gct,
    Genepred,
    GffGtf,
    Gistic,
    Goby,
    Gwas,
    Igv,
    Loh,
    MafMultipleAlignmentFormat,
    MafMutationAnnotationFormat,
    MergedBamFile,
    Mut,
    Narrowpeak,
    Psl,
    Res,
    RnaSecondaryStructureFormats,
    Sam,
    SampleInfoAttributesFile,
    Seg,
    Tdf,
    TrackLine,
    TypeLine,
    Vcf,
    Wig,
}

Expand description

GenomicStudyDataFormat. The data format relevant to genomics. These formats and relevant codes were pulled from Integrative Genomics Viewer Documentation by Broad Institute.

FHIR version: 5.0.0.

Variants§

Bam

bam

BAM.

Bed

bed

BED.

Bedgraph

bedgraph

BedGraph.

Bedpe

bedpe

BEDPE.

BigWig

bigWig

bigWig.

Bigbed

bigbed

bigBed.

BirdsuiteFiles

birdsuite-files

Birdsuite-Files.

Broadpeak

broadpeak

broadPeak.

Cbs

cbs

CBS.

ChemicalReactivityProbingProfiles

chemical-reactivity-probing-profiles

Chemical-Reactivity-Probing-Profiles.

ChromSizes

chrom-sizes

chrom-sizes.

Cn

cn

CN.

Cram

cram

CRAM.

CustomFileFormats

custom-file-formats

Custom-File-Formats.

Cytoband

cytoband

Cytoband.

Fasta

fasta

FASTA.

Gct

gct

GCT.

Genepred

genepred

genePred.

GffGtf

gff-gtf

GFF/GTF.

Gistic

gistic

GISTIC.

Goby

goby

Goby.

Gwas

gwas

GWAS.

Igv

igv

IGV.

Loh

loh

LOH.

MafMultipleAlignmentFormat

maf-multiple-alignment-format

MAF-Multiple Alignment Format.

MafMutationAnnotationFormat

maf-mutation-annotation-format

MAF-Mutation-Annotation-Format.

MergedBamFile

merged-bam-file

Merged BAM File.

Mut

mut

MUT.

Narrowpeak

narrowpeak

narrowPeak.

Psl

psl

PSL.

Res

res

RES.

RnaSecondaryStructureFormats

rna-secondary-structure-formats

RNA-Secondary-Structure-Formats.

Sam

sam

SAM.

SampleInfoAttributesFile

sample-info-attributes-file

Sample-Info-Attributes-file.

Seg

seg

SEG.

Tdf

tdf

TDF.

TrackLine

track-line

Track Line.

TypeLine

type-line

Type Line.

Vcf

vcf

VCF.

Wig

wig

WIG.

Trait Implementations§

impl AsRef<str> for GenomicStudyDataFormat

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for GenomicStudyDataFormat

fn clone(&self) -> GenomicStudyDataFormat

Returns a duplicate of the value. Read more

1.0.0 · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for GenomicStudyDataFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

impl<'de> Deserialize<'de> for GenomicStudyDataFormat

fn deserialize<D>( deserializer: D, ) -> Result<GenomicStudyDataFormat, <D as Deserializer<'de>>::Error>
where D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer. Read more

impl Display for GenomicStudyDataFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter. Read more

impl From<GenomicStudyDataFormat> for CodeableConcept

fn from(code: GenomicStudyDataFormat) -> CodeableConcept

Converts to this type from the input type.

impl From<GenomicStudyDataFormat> for Coding

fn from(code: GenomicStudyDataFormat) -> Coding

Converts to this type from the input type.

impl FromStr for GenomicStudyDataFormat

type Err = String

The associated error which can be returned from parsing.

fn from_str( s: &str, ) -> Result<GenomicStudyDataFormat, <GenomicStudyDataFormat as FromStr>::Err>

Parses a string s to return a value of this type. Read more

impl Hash for GenomicStudyDataFormat

fn hash<H>(&self, state: &mut H)
where __H: Hasher,

Feeds this value into the given Hasher. Read more

1.3.0 · Source§

fn hash_slice<H>(data: &[Self], state: &mut H)
where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher. Read more

impl PartialEq for GenomicStudyDataFormat

fn eq(&self, other: &GenomicStudyDataFormat) -> bool

Tests for self and other values to be equal, and is used by ==.

1.0.0 · Source§

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for GenomicStudyDataFormat

fn serialize<S>( &self, serializer: S, ) -> Result<<S as Serializer>::Ok, <S as Serializer>::Error>
where S: Serializer,

Serialize this value into the given Serde serializer. Read more

impl Copy for GenomicStudyDataFormat

impl Eq for GenomicStudyDataFormat

impl StructuralPartialEq for GenomicStudyDataFormat

Auto Trait Implementations§

impl Freeze for GenomicStudyDataFormat

impl RefUnwindSafe for GenomicStudyDataFormat

impl Send for GenomicStudyDataFormat

impl Sync for GenomicStudyDataFormat

impl Unpin for GenomicStudyDataFormat

impl UnwindSafe for GenomicStudyDataFormat

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T
where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> CloneToUninit for T
where T: Clone,

unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

impl<Q, K> Equivalent<K> for Q
where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Checks if this value is equivalent to the given key. Read more

impl<Q, K> Equivalent<K> for Q
where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

impl<T> From<T> for T

fn from(t: T) -> T

Returns the argument unchanged.

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

impl<T, U> Into<U> for T
where U: From<T>,

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> PolicyExt for T
where T: ?Sized,

fn and<P, B, E>(self, other: P) -> And<T, P>
where T: Policy<B, E>, P: Policy<B, E>,

Create a new Policy that returns Action::Follow only if self and other return Action::Follow. Read more

fn or<P, B, E>(self, other: P) -> Or<T, P>
where T: Policy<B, E>, P: Policy<B, E>,

Create a new Policy that returns Action::Follow if either self or other returns Action::Follow. Read more

impl<T> ToOwned for T
where T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

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Uses borrowed data to replace owned data, usually by cloning. Read more

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where T: Display + ?Sized,

fn to_string(&self) -> String

Converts the given value to a String. Read more

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where T: Display,

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ToString::to_string, but without panic on OOM.

impl<T, U> TryFrom<U> for T
where U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.

impl<V, T> VZip<V> for T
where V: MultiLane<T>,

fn vzip(self) -> V

impl<T> WithSubscriber for T

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where S: Into<Dispatch>,

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where T: for<'de> Deserialize<'de>,

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