Enum FgumiError 

pub enum FgumiError {
    InvalidParameter {
        parameter: String,
        reason: String,
    },
    InvalidFrequency {
        value: f64,
        min: f64,
        max: f64,
    },
    InvalidQuality {
        value: u8,
        max: u8,
    },
    InvalidFileFormat {
        file_type: String,
        path: String,
        reason: String,
    },
    ReferenceNotFound {
        ref_name: String,
    },
}

Error type for fgumi operations

Variants

InvalidParameter

Invalid parameter value provided

Fields

parameter: String

The parameter name

reason: String

Explanation of why it’s invalid

InvalidFrequency

Invalid frequency threshold

Fields

value: f64

The invalid frequency value

min: f64

Minimum valid value

max: f64

Maximum valid value

InvalidQuality

Invalid quality threshold

Fields

value: u8

The invalid quality value

max: u8

Maximum valid value (usually 93 for SAM/BAM)

InvalidFileFormat

File format error

Fields

file_type: String

Type of file (e.g., “BAM”, “FASTQ”)

path: String

Path to the file

reason: String

Explanation of the problem

ReferenceNotFound

Required reference sequence not found

Fields

ref_name: String

The reference sequence name

Trait Implementations

impl Debug for FgumiError

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for FgumiError

fn fmt(&self, __formatter: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Error for FgumiError

fn source(&self) -> Option<&(dyn Error + 'static)>

Returns the lower-level source of this error, if any.

fn description(&self) -> &str

👎Deprecated since 1.42.0: use the Display impl or to_string()

fn cause(&self) -> Option<&dyn Error>

👎Deprecated since 1.33.0: replaced by Error::source, which can support downcasting

fn provide<'a>(&'a self, request: &mut Request<'a>)

🔬This is a nightly-only experimental API. (error_generic_member_access)

Provides type-based access to context intended for error reports.