Enum RejectionReason 

pub enum RejectionReason {
    InsufficientSupport,
    MinorityAlignment,
    InsufficientStrandSupport,
    LowBaseQuality,
    ExcessiveNBases,
    NoValidAlignment,
    LowMappingQuality,
    NBasesInUmi,
    MissingUmi,
    NotPassingFilter,
    LowMeanQuality,
    InsufficientMinDepth,
    ExcessiveErrorRate,
    UmiTooShort,
    SameStrandOnly,
    DuplicateUmi,
    OrphanConsensus,
    ZeroBasesPostTrimming,
}

Reasons why a read or template was rejected during processing.

Each variant represents a specific reason for rejection, allowing for detailed tracking and reporting of why data was filtered out.

Variants

InsufficientSupport

Insufficient reads to generate a consensus

MinorityAlignment

Read has a different, and minority, set of indels

InsufficientStrandSupport

Too few reads agreed on the strand orientation

LowBaseQuality

Base quality scores were below threshold

ExcessiveNBases

Read group had too many N bases

NoValidAlignment

Template had no valid alignments

LowMappingQuality

Reads failed mapping quality threshold

NBasesInUmi

UMI contained N bases

MissingUmi

Read lacks required UMI tag

NotPassingFilter

Reads were marked as not passing filter (PF flag)

LowMeanQuality

Consensus read had too low mean quality

InsufficientMinDepth

Consensus read had insufficient minimum depth

ExcessiveErrorRate

Consensus read had excessive error rate

UmiTooShort

UMI was too short

SameStrandOnly

Template had reads on same strand only (no proper pair)

DuplicateUmi

Duplicate UMI at same genomic position

OrphanConsensus

Only one of R1 or R2 consensus was generated (orphan)

ZeroBasesPostTrimming

Read had zero bases after quality trimming

Implementations

impl RejectionReason

pub fn description(&self) -> &'static str

Returns a human-readable description.

pub fn tsv_key(&self) -> &'static str

Returns the TSV metric key for this rejection reason.

pub fn kv_description(&self) -> &'static str

Returns a short description for key-value metrics output.

Trait Implementations

impl Clone for RejectionReason

fn clone(&self) -> RejectionReason

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for RejectionReason

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for RejectionReason

fn deserialize<__D>( __deserializer: __D, ) -> Result<RejectionReason, <__D as Deserializer<'de>>::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for RejectionReason

fn fmt(&self, f: &mut Formatter<'_>) -> Result<(), Error>

Formats the value using the given formatter.

impl Hash for RejectionReason

fn hash<__H>(&self, state: &mut __H)

where __H: Hasher,

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for RejectionReason

fn eq(&self, other: &RejectionReason) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for RejectionReason

fn serialize<__S>( &self, __serializer: __S, ) -> Result<<__S as Serializer>::Ok, <__S as Serializer>::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for RejectionReason

impl Eq for RejectionReason

impl StructuralPartialEq for RejectionReason