Struct ViennaRNA 

pub struct ViennaRNA { /* private fields */ }

The union of different parameterizations, may contain redundant fallback parameters.

Implementations

impl ViennaRNA

pub fn from_andrunescu_params(params: &'static AndronescuParams) -> Self

Initializes a model from fitted parameters, which means there is no possiblity to change the temperature.

pub fn from_thermo_params( params: &'static RNAThermoParams, celsius: f64, ) -> Self

Initializes a model from thermodynamic parameters. That’s the default!

Trait Implementations

impl Default for ViennaRNA

fn default() -> Self

Returns the “default value” for a type.

impl EnergyModel for ViennaRNA

fn temperature(&self) -> f64

fn can_pair(&self, b1: Base, b2: Base) -> bool

fn min_hairpin_size(&self) -> usize

fn energy_of_structure<T: LoopDecomposition>( &self, sequence: &[Base], structure: &T, ) -> Result<i32, EnergyError>

fn energy_of_loop( &self, sequence: &[Base], nn_loop: &NearestNeighborLoop, ) -> Result<i32, EnergyError>