Struct IntronPosition 

pub struct IntronPosition {
    pub intron_number: u32,
    pub boundary: IntronBoundary,
    pub offset: i64,
    pub tx_boundary_pos: u64,
    pub intron_length: u64,
}

Position within an intron

Fields

intron_number: u32

Intron number (1-based)

boundary: IntronBoundary

Which exon boundary this position is relative to

offset: i64

Offset from the boundary (positive for 5’ boundary, negative for 3’)

tx_boundary_pos: u64

Transcript position of the exon boundary

intron_length: u64

Total length of the intron in bases

Implementations

impl IntronPosition

pub fn is_deep_intronic(&self) -> bool

Check if this is a deep intronic position (>50bp from nearest exon)

pub fn is_canonical_splice_site(&self) -> bool

Check if this is at a canonical splice site (within 2bp of exon)

pub fn is_near_splice_site(&self) -> bool

Check if this is near a splice site (within 10bp of exon)

pub fn is_extended_splice_region(&self) -> bool

Check if this is in the extended splice region (within 20bp of exon)

pub fn splice_site_type(&self) -> SpliceSiteType

Get the splice site type based on position

pub fn distance_from_donor(&self) -> Option<u64>

Get distance from splice donor (5’ end of intron)

pub fn distance_from_acceptor(&self) -> Option<u64>

Get distance from splice acceptor (3’ end of intron)

Trait Implementations

impl Clone for IntronPosition

fn clone(&self) -> IntronPosition

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for IntronPosition

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for IntronPosition

fn eq(&self, other: &IntronPosition) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for IntronPosition

impl Eq for IntronPosition

impl StructuralPartialEq for IntronPosition