Struct Intron 

pub struct Intron {
    pub number: u32,
    pub upstream_exon: u32,
    pub downstream_exon: u32,
    pub genomic_start: Option<u64>,
    pub genomic_end: Option<u64>,
    pub tx_5prime_boundary: u64,
    pub tx_3prime_boundary: u64,
}

An intron between two exons

Fields

number: u32

Intron number (1-based, intron 1 is between exon 1 and exon 2)

upstream_exon: u32

5’ exon number (upstream exon)

downstream_exon: u32

3’ exon number (downstream exon)

genomic_start: Option<u64>

Genomic start position (1-based, first intronic base)

genomic_end: Option<u64>

Genomic end position (1-based, last intronic base)

tx_5prime_boundary: u64

Transcript position of last exonic base before intron (5’ boundary)

tx_3prime_boundary: u64

Transcript position of first exonic base after intron (3’ boundary)

Implementations

impl Intron

pub fn new( number: u32, upstream_exon: u32, downstream_exon: u32, tx_5prime_boundary: u64, tx_3prime_boundary: u64, ) -> Self

Create a new intron

pub fn with_genomic( number: u32, upstream_exon: u32, downstream_exon: u32, tx_5prime_boundary: u64, tx_3prime_boundary: u64, genomic_start: u64, genomic_end: u64, ) -> Self

Create a new intron with genomic coordinates

pub fn genomic_length(&self) -> Option<u64>

Get the genomic length of the intron

Uses saturating arithmetic to prevent overflow in edge cases.

pub fn contains_genomic(&self, pos: u64) -> bool

Check if a genomic position is within this intron

Trait Implementations

impl Clone for Intron

fn clone(&self) -> Intron

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Intron

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Intron

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for Intron

fn eq(&self, other: &Intron) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for Intron

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for Intron

impl StructuralPartialEq for Intron