Struct Exon 

pub struct Exon {
    pub number: u32,
    pub start: u64,
    pub end: u64,
    pub genomic_start: Option<u64>,
    pub genomic_end: Option<u64>,
}

An exon in a transcript

Fields

number: u32

Exon number (1-based)

start: u64

Start position in transcript coordinates (1-based, inclusive)

end: u64

End position in transcript coordinates (1-based, inclusive)

genomic_start: Option<u64>

Genomic start position (1-based, inclusive)

genomic_end: Option<u64>

Genomic end position (1-based, inclusive)

Implementations

impl Exon

pub fn new(number: u32, start: u64, end: u64) -> Self

Create a new exon with transcript coordinates only

pub fn with_genomic( number: u32, start: u64, end: u64, genomic_start: u64, genomic_end: u64, ) -> Self

Create a new exon with both transcript and genomic coordinates

pub fn len(&self) -> u64

Length of the exon

pub fn is_empty(&self) -> bool

pub fn contains(&self, pos: u64) -> bool

Check if a position is within this exon

Trait Implementations

impl Clone for Exon

fn clone(&self) -> Exon

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Exon

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Exon

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for Exon

fn eq(&self, other: &Exon) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for Exon

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Eq for Exon

impl StructuralPartialEq for Exon