Enum Alphabet 

pub enum Alphabet {
    Dna,
    Rna,
    Iupac,
    Protein,
    Any,
}

A residue alphabet used for validation.

Variants

Dna

ACGT plus N, either case.

Rna

ACGU plus N, either case.

Iupac

The full IUPAC nucleotide set plus - and . gaps.

Protein

The 20 amino acids plus BXZJUO*-., either case.

Any

Any printable, non-whitespace byte.

Implementations

impl Alphabet

pub fn contains(self, byte: u8) -> bool

Whether byte is a member of the alphabet.

pub fn validate(self, seq: &[u8]) -> Result<()>

Check every byte of seq, reporting the first violation.

pub fn validate_named(self, seq: &[u8], id: &str) -> Result<()>

Like Alphabet::validate but attaches a record id to the error.

Trait Implementations

impl Clone for Alphabet

fn clone(&self) -> Alphabet

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for Alphabet

impl Debug for Alphabet

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Eq for Alphabet

impl Hash for Alphabet

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for Alphabet

fn eq(&self, other: &Alphabet) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl StructuralPartialEq for Alphabet