Struct PhredEncoding 

pub struct PhredEncoding {
    pub name: &'static str,
    pub offset: u8,
}

Phred quality encoding detection.

Replicates the logic from Sequence/QualityEncoding/PhredEncoding.java.

Fields

name: &'static str

offset: u8

Implementations

impl PhredEncoding

pub const SANGER: PhredEncoding

The Sanger / Illumina 1.9 (Phred+33) encoding.

This is the encoding produced by construction for BAM/SAM input: BAM stores raw Phred values which the reader converts to ASCII by adding 33, and SAM quality strings are Phred+33 by specification.

impl PhredEncoding

pub const PHRED64: PhredEncoding

Marker for --phred64: tells resolve to read the quality as Phred+64, naming Illumina 1.3 vs 1.5 from the lowest character.

Trait Implementations

impl Clone for PhredEncoding

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for PhredEncoding

impl Debug for PhredEncoding

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.