Struct BaseGroup 

pub struct BaseGroup {
    pub lower_count: usize,
    pub upper_count: usize,
}

Base position grouping for read-level plots.

Replicates the logic from Graphs/BaseGroup.java. Early positions are shown individually while later positions are grouped into bins so that general trends remain visible without overwhelming the output. A range of read positions (0-based, inclusive on both ends).

Fields

lower_count: usize

upper_count: usize

Implementations

impl BaseGroup

pub fn label(&self) -> String

Human-readable label for this group.

Java’s BaseGroup.toString() uses 1-based positions. A single-position group prints as e.g. “1”, a range as “10-14”.

pub fn make_base_groups( max_length: usize, min_length: usize, nogroup: bool, expgroup: bool, ) -> Vec<BaseGroup>

Build the set of base groups for a given maximum read length.

Replicates BaseGroup.makeBaseGroups(int). The Java code works in 1-based coordinates internally and we convert to 0-based here. If min_length (from config) exceeds max_length, groups are extended to cover min_length positions, matching Java’s BaseGroup.java behavior.

Trait Implementations

impl Clone for BaseGroup

fn clone(&self) -> BaseGroup

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BaseGroup

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for BaseGroup

fn eq(&self, other: &BaseGroup) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for BaseGroup

impl StructuralPartialEq for BaseGroup