Struct RustPileupConfig 

#[non_exhaustive]
pub struct RustPileupConfig {
    pub onlyprimary: bool,
    pub minqual: u8,
    pub minscore: u8,
    pub reversedel: bool,
    pub outputends: bool,
    /* private fields */
}

Config for RustPileUp. Number of arguments might change over time and therefore is not exhaustive, please use functions.

Fields (Non-exhaustive)

Non-exhaustive structs could have additional fields added in future. Therefore, non-exhaustive structs cannot be constructed in external crates using the traditional Struct { .. } syntax; cannot be matched against without a wildcard ..; and struct update syntax will not work.

onlyprimary: bool

minqual: u8

minscore: u8

reversedel: bool

outputends: bool

Implementations

impl RustPileupConfig

pub fn new( onlyprimary: bool, minqual: u8, minscore: u8, reversedel: bool, outputends: bool, ) -> Self

Configuration for pileup. Recalculate BAM must be off (else panics)

pub fn getBAMrecalculate(&self) -> bool

Get BAM recalculation, is not implemented so cannot be changed and must be false

pub fn isonlyprimary(&self) -> bool

pub fn setonlyprimary(&mut self, primary: bool)

pub fn getminqual(&self) -> u8

pub fn setminqual(&mut self, minqual: u8)

pub fn getminscore(&self) -> u8

pub fn setminscore(&mut self, minscore: u8)

pub fn hasreversedel(&self) -> bool

pub fn setreversedel(&mut self, reversedel: bool)

pub fn hasoutputends(&self) -> bool

pub fn setoutputends(&mut self, outputends: bool)

Trait Implementations

impl Clone for RustPileupConfig

fn clone(&self) -> RustPileupConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for RustPileupConfig

impl Debug for RustPileupConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for RustPileupConfig

fn default() -> Self

Returns the “default value” for a type.

impl Eq for RustPileupConfig

impl PartialEq for RustPileupConfig

fn eq(&self, other: &RustPileupConfig) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl StructuralPartialEq for RustPileupConfig