Struct MatchSequence 

pub struct MatchSequence {
    pub hash: BTreeMap<RangePos, String>,
}

Matching sequence, return a genomic range and associated sequence

use extended_htslib::bam::ext::MatchSequence;
let test = MatchSequence::default();
for (range, sequence) in test.gethash() {
    println!("SEQ: {} for {}-{}",sequence,range.start,range.end);
}

Fields

hash: BTreeMap<RangePos, String>

Implementations

impl MatchSequence

pub fn new(range: RangePos, text: String) -> Self

pub fn gethash(&self) -> &BTreeMap<RangePos, String>

pub fn isfullymatched(&self, range: RangeInclusive<i64>) -> Option<String>

Check if a range of genomic position is completely aligned with the read. Return the sequence if yes else return None

Trait Implementations

impl Default for MatchSequence

fn default() -> Self

Returns the “default value” for a type.