Struct TopTable

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pub struct TopTable {
    pub index: Vec<usize>,
    pub log_fc: Vec<f64>,
    pub ci_lower: Option<Vec<f64>>,
    pub ci_upper: Option<Vec<f64>>,
    pub ave_expr: Option<Vec<f64>>,
    pub t: Vec<f64>,
    pub p_value: Vec<f64>,
    pub adj_p_value: Vec<f64>,
    pub b: Vec<f64>,
}

Expand description

A ranked table for one coefficient.

Every vector is the same length and in the table’s order; TopTable::index maps back to the original gene.

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§index: Vec<usize>

Original gene index of each row.

§log_fc: Vec<f64>

Log fold change, the coefficient itself.

§ci_lower: Option<Vec<f64>>

Lower end of the confidence interval, when one was asked for.

§ci_upper: Option<Vec<f64>>

Upper end of the confidence interval.

§ave_expr: Option<Vec<f64>>

Average expression, from MArrayLm::amean. None when the fit has none.

§t: Vec<f64>

Moderated t.

§p_value: Vec<f64>

Two-sided p-value.

§adj_p_value: Vec<f64>

Benjamini-Hochberg adjusted p-value, computed over all genes before any thinning, so it does not depend on number or p_value.

§b: Vec<f64>

Log-odds of differential expression.

Trait Implementations§

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impl Clone for TopTable

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fn clone(&self) -> Self

Returns a duplicate of the value. Read more

1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for TopTable

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

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impl UnwindSafe for TopTable

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> ByRef<T> for T

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fn by_ref(&self) -> &T

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impl<ST, DT> CastableFrom<ST, Initialized, Initialized> for DT
where ST: ?Sized, DT: ?Sized,

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impl<ST, DT> CastableFrom<ST, Uninit, Uninit> for DT
where ST: ?Sized, DT: ?Sized,

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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

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impl<T> DistributionExt for T
where T: ?Sized,

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fn rand<T>(&self, rng: &mut (impl Rng + ?Sized)) -> T
where Self: Distribution<T>,

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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Imply<T> for U
where T: ?Sized, U: ?Sized,

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impl<T, U> Into for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self> ⓘ

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self> ⓘ
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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