Struct ReactionSystem 

pub struct ReactionSystem {
    pub reference: Option<Reference>,
    pub species: IndexMap<String, Species>,
    pub parameters: IndexMap<String, Parameter>,
    pub reactions: Vec<Reaction>,
    pub constraint_equations: Option<Vec<Equation>>,
    pub discrete_events: Option<Vec<DiscreteEvent>>,
    pub continuous_events: Option<Vec<ContinuousEvent>>,
    pub subsystems: Option<IndexMap<String, Value>>,
    pub tolerance: Option<Tolerance>,
    pub tests: Option<Vec<ModelTest>>,
    pub analyses: Option<Vec<ModelAnalysis>>,
}

Reaction network component

Fields

reference: Option<Reference>

Academic citation or data source reference

species: IndexMap<String, Species>

Chemical species, keyed by species name

parameters: IndexMap<String, Parameter>

Named parameters (rate constants, temperature, photolysis rates, etc.)

reactions: Vec<Reaction>

Chemical reactions

constraint_equations: Option<Vec<Equation>>

Additional algebraic or ODE constraints

discrete_events: Option<Vec<DiscreteEvent>>

Discrete events

continuous_events: Option<Vec<ContinuousEvent>>

Continuous events

subsystems: Option<IndexMap<String, Value>>

Named child reaction systems (subsystems), keyed by unique identifier

tolerance: Option<Tolerance>

System-level default numerical tolerance for inline tests (schema ReactionSystem.tolerance, the Model::tolerance counterpart); previously unmodelled here and so dropped on round trip — as were tests and analyses below.

tests: Option<Vec<ModelTest>>

Inline validation tests that exercise this reaction system in isolation (schema ReactionSystem.tests, same Test entries as Model::tests).

analyses: Option<Vec<ModelAnalysis>>

Inline illustrative analyses of how to run this reaction system (schema ReactionSystem.analyses, same Analysis entries as Model::analyses).

Trait Implementations

impl Clone for ReactionSystem

fn clone(&self) -> Self

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReactionSystem

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ReactionSystem

fn default() -> Self

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for ReactionSystem

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for ReactionSystem

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl ExpressionGraphInput for ReactionSystem

fn build_expression_graph(&self) -> ExpressionGraph

Build the graph with default options.

fn build_expression_graph_with_options( &self, _options: &ExpressionGraphOptions, ) -> ExpressionGraph

Build the graph honouring options. The default implementation ignores them: only EsmFile carries a coupling list for merge_coupled to fold in.

impl Serialize for ReactionSystem

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.