Enum RegionMatch 

pub enum RegionMatch {
    Uncompared,
    Match {
        seq_match: Arc<LibraryRegion>,
        distance: u64,
        diff: Option<SequenceDiff>,
    },
    MultiMatch {
        seq_matches: Vec<Arc<LibraryRegion>>,
        distance: u64,
        diffs: Option<Vec<SequenceDiff>>,
    },
    Overmatched {
        distance: u64,
        matches: usize,
    },
    Unmatched,
    NoLibrary {
        seq: Option<SeqHandle>,
    },
}

Status of the match between an ObservedRegion and a Library

This stores both the qualitative match status and any associated library sequence(s), distance(s), and sequence-difference information.

Variants

Uncompared

Library comparison has not yet been performed.

Match

A unique best library-region match was found.

Fields

seq_match: Arc<LibraryRegion>

distance: u64

diff: Option<SequenceDiff>

MultiMatch

Multiple equally good best library-region matches were found.

Fields

seq_matches: Vec<Arc<LibraryRegion>>

distance: u64

diffs: Option<Vec<SequenceDiff>>

Overmatched

More than max_matches equally good matches were found.

Fields

distance: u64

matches: usize

Unmatched

No acceptable library-region match was found.

NoLibrary

This region is not represented in the supplied library.

The observed sequence may optionally be retained for output.

Fields

seq: Option<SeqHandle>

Implementations

impl RegionMatch

pub fn to_strings(&self) -> (String, String, String, String)

Convert the library-match portion of this region comparison into strings for TSV/output generation.

Returns:

• matching sequence(s),
• sequence difference(s),
• match distance,
• number of matches.

Trait Implementations

impl Clone for RegionMatch

fn clone(&self) -> RegionMatch

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for RegionMatch

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Eq for RegionMatch

impl Hash for RegionMatch

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for RegionMatch

fn eq(&self, other: &RegionMatch) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for RegionMatch