Struct FastaPartition 

pub struct FastaPartition {
    pub partition_index: usize,
    pub name: Vec<u8>,
    pub core: Range<u64>,
    pub fetch: Range<u64>,
}

One planned reference partition over indexed FASTA sequence coordinates.

Fields

partition_index: usize

Zero-based partition index in output order.

name: Vec<u8>

Reference name from the FASTA index.

core: Range<u64>

Core half-open sequence range assigned to this partition.

fetch: Range<u64>

Half-open sequence range to fetch, expanded by overlap and clamped to the reference bounds.

Implementations

impl FastaPartition

pub fn core_len(&self) -> u64

Return the number of non-overlap bases assigned to this partition.

pub fn core_offset_in_fetch(&self) -> u64

Return the zero-based offset of the first fetched base relative to the first core base.

Trait Implementations

impl Clone for FastaPartition

fn clone(&self) -> FastaPartition

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FastaPartition

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Eq for FastaPartition

impl PartialEq for FastaPartition

fn eq(&self, other: &FastaPartition) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for FastaPartition