Struct BaseSummary 

pub struct BaseSummary {
    pub len: usize,
    pub a: usize,
    pub c: usize,
    pub g: usize,
    pub t: usize,
    pub n: usize,
}

Summary of a packed DNA sequence.

Fields

len: usize

Number of bases observed.

a: usize

Number of canonical A bases.

c: usize

Number of canonical C bases.

g: usize

Number of canonical G bases.

t: usize

Number of canonical T bases.

n: usize

Number of ambiguous or non-canonical bases.

Implementations

impl BaseSummary

pub fn gc_bases(self) -> usize

Return the number of C or G bases.

pub fn canonical_bases(self) -> usize

Return the number of A/C/G/T bases.

pub fn is_empty(self) -> bool

Return true when no bases were observed.

Trait Implementations

impl Clone for BaseSummary

fn clone(&self) -> BaseSummary

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for BaseSummary

impl Debug for BaseSummary

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for BaseSummary

fn default() -> BaseSummary

Returns the “default value” for a type.

impl Eq for BaseSummary

impl PartialEq for BaseSummary

fn eq(&self, other: &BaseSummary) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl StructuralPartialEq for BaseSummary