Struct ScannerBuilder 

pub struct ScannerBuilder { /* private fields */ }

A builder type to parameterize a Scanner.

Implementations

impl ScannerBuilder

pub fn new() -> Self

Create a new scanner builder with default parameters.

pub fn scan<S: AsRef<str> + Clone>(&self, sequence: S) -> Scanner<S>

Scan the provided sequence for CRISPR regions iteratively.

The sequence can be provided as any string view that also implements Clone. This allows several smart pointers to be passed (&str, Rc<str>, Arc<str>, etc.). The actual sequence object however will be cloned into the result Crispr, so make sure it implements a cheap Clone, and avoid passing a String.

pub fn min_repeat_count(&mut self, min_repeat_count: usize) -> &mut Self

Set the minimum repeat number for CRISPR detection.

pub fn min_repeat_length(&mut self, min_repeat_length: usize) -> &mut Self

Set the minimum length for each CRISPR repeat.

pub fn max_repeat_length(&mut self, max_repeat_length: usize) -> &mut Self

Set the maximum length for each CRISPR repeat.

pub fn min_spacer_length(&mut self, min_spacer_length: usize) -> &mut Self

Set the minimum length for each CRISPR spacer.

pub fn max_spacer_length(&mut self, max_spacer_length: usize) -> &mut Self

Set the maximum length for each CRISPR spacer.

Trait Implementations

impl Clone for ScannerBuilder

fn clone(&self) -> ScannerBuilder

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Default for ScannerBuilder

fn default() -> Self

Returns the “default value” for a type.