Enum WorkflowCommand 

pub enum WorkflowCommand {
    GexMapping(GexMappingCommand),
    CrisprMapping(CrisprMappingCommand),
}

Variants

GexMapping(GexMappingCommand)

Executes a gex mapping workflow (map => sort => barcode => sort => umi => sort => count)

CrisprMapping(CrisprMappingCommand)

Executes a crispr mapping workflow (map => sort => barcode => sort => umi => sort => count)

Implementations

impl WorkflowCommand

pub fn validate_outdir(&self) -> Result<()>

pub fn log_path(&self) -> PathBuf

Trait Implementations

impl Debug for WorkflowCommand

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for WorkflowCommand

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut<'b>( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

impl Subcommand for WorkflowCommand

fn augment_subcommands<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_subcommands_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

fn has_subcommand(__clap_name: &str) -> bool

Test whether Self can parse a specific subcommand