Type Alias DnaSequence 

pub type DnaSequence = ValidatedSeq<DnaAlphabet>;

A validated DNA sequence (IUPAC alphabet).

Aliased Type

pub struct DnaSequence { /* private fields */ }

Implementations

impl DnaSequence

pub fn reverse_complement(&self) -> DnaSequence

Return the reverse complement.

pub fn transcribe(&self) -> RnaSequence

Transcribe DNA to RNA (T → U).

pub fn translate(&self) -> Result<ProteinSequence>

Translate DNA to protein (transcribes first, then translates).

pub fn translate_with(&self, code: &GeneticCode) -> Result<ProteinSequence>

Translate DNA to protein using a specific genetic code table.

pub fn gc_content(&self) -> f64

GC content as a fraction in [0.0, 1.0].

Only counts unambiguous G and C bases. Returns 0.0 for empty sequences.

pub fn kmers(&self, k: usize) -> Result<KmerIter<'_>>

Iterate over k-mers of length k.