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TrimReport

cyanea_seq::trim

Struct TrimReport

pub struct TrimReport {
    pub kept: Vec<FastqRecord>,
    pub total_input: usize,
    pub total_output: usize,
    pub filtered_by_length: usize,
    pub filtered_by_quality: usize,
    pub filtered_by_complexity: usize,
    pub adapters_found: usize,
    pub total_bases_input: u64,
    pub total_bases_output: u64,
}

Expand description

Summary statistics from TrimPipeline::process_batch_with_stats.

Fields§

§kept: Vec<FastqRecord>

Records that passed all filters.

§total_input: usize

Total number of input records.

§total_output: usize

Total number of output records.

§filtered_by_length: usize

Records filtered out for being too short or too long.

§filtered_by_quality: usize

Records filtered out for low mean quality.

§filtered_by_complexity: usize

Records filtered out for low complexity.

§adapters_found: usize

Number of records where an adapter was detected.

§total_bases_input: u64

Total bases in input records.

§total_bases_output: u64

Total bases in output records.

Trait Implementations§

impl Clone for TrimReport

fn clone(&self) -> TrimReport

Returns a duplicate of the value. Read more

1.0.0 · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for TrimReport

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

impl Freeze for TrimReport

impl RefUnwindSafe for TrimReport

impl Send for TrimReport

impl Sync for TrimReport

impl Unpin for TrimReport

impl UnsafeUnpin for TrimReport

impl UnwindSafe for TrimReport

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T
where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> CloneToUninit for T
where T: Clone,

unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

impl<T> From<T> for T

fn from(t: T) -> T

Returns the argument unchanged.

impl<T, U> Into<U> for T
where U: From<T>,

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> Same for T

type Output = T

Should always be Self

impl<T> ToOwned for T
where T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T, U> TryFrom<U> for T
where U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.