Struct PairedTrimReport 

pub struct PairedTrimReport {
    pub kept: Vec<PairedFastqRecord>,
    pub total_input: usize,
    pub both_passed: usize,
    pub r1_only_passed: usize,
    pub r2_only_passed: usize,
    pub both_failed: usize,
    pub total_bases_input: u64,
    pub total_bases_output: u64,
}

Summary statistics from paired-end trim processing.

Fields

kept: Vec<PairedFastqRecord>

Pairs where both reads passed all filters.

total_input: usize

Total number of input pairs.

both_passed: usize

Pairs where both reads passed.

r1_only_passed: usize

Pairs where only R1 passed.

r2_only_passed: usize

Pairs where only R2 passed.

both_failed: usize

Pairs where both reads failed.

total_bases_input: u64

Total bases across all input reads (R1 + R2).

total_bases_output: u64

Total bases across kept output reads (R1 + R2).

Implementations

impl PairedTrimReport

pub fn orphans(&self) -> usize

Number of orphan reads (one mate passed, the other didn’t).

pub fn survival_rate(&self) -> f64

Fraction of input pairs where both reads survived.

Trait Implementations

impl Clone for PairedTrimReport

fn clone(&self) -> PairedTrimReport

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for PairedTrimReport

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.