Struct AssemblyStats 

pub struct AssemblyStats {
    pub n_contigs: usize,
    pub total_length: usize,
    pub largest_contig: usize,
    pub smallest_contig: usize,
    pub gc_content: f64,
    pub n50: usize,
    pub l50: usize,
    pub n90: usize,
    pub l90: usize,
    pub auN: f64,
}

Assembly quality statistics.

Fields

n_contigs: usize

Number of contigs.

total_length: usize

Total assembly length in bases.

largest_contig: usize

Length of the largest contig.

smallest_contig: usize

Length of the smallest contig.

gc_content: f64

GC content as a fraction (0.0–1.0), ignoring N bases.

n50: usize

N50: the length such that contigs of this length or longer cover ≥ 50% of the assembly.

l50: usize

L50: the number of contigs needed to reach N50 cumulative length.

n90: usize

N90: the length such that contigs of this length or longer cover ≥ 90% of the assembly.

l90: usize

L90: the number of contigs needed to reach N90 cumulative length.

auN: f64

Area under the Nx curve (auN = Σ length² / total_length).

Trait Implementations

impl Clone for AssemblyStats

fn clone(&self) -> AssemblyStats

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AssemblyStats

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.