Struct Transcript 

pub struct Transcript {
    pub transcript_id: String,
    pub start: u64,
    pub end: u64,
    pub exons: Vec<Exon>,
    pub cds_start: Option<u64>,
    pub cds_end: Option<u64>,
}

A transcript with optional CDS boundaries.

Fields

transcript_id: String

start: u64

0-based start (inclusive).

end: u64

0-based end (exclusive).

exons: Vec<Exon>

cds_start: Option<u64>

CDS start (0-based inclusive), if protein-coding.

cds_end: Option<u64>

CDS end (0-based exclusive), if protein-coding.

Implementations

impl Transcript

pub fn len(&self) -> u64

Length of the transcript span in bases.

pub fn is_empty(&self) -> bool

Whether the transcript has zero length.

pub fn n_exons(&self) -> usize

Number of exons.

pub fn exonic_length(&self) -> u64

Total exonic length (sum of individual exon lengths).

pub fn to_genomic_interval( &self, chrom: &str, strand: Strand, ) -> GenomicInterval

Convert this transcript to a GenomicInterval on the given chromosome and strand.

Trait Implementations

impl Clone for Transcript

fn clone(&self) -> Transcript

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Transcript

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for Transcript

fn eq(&self, other: &Transcript) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Transcript

impl StructuralPartialEq for Transcript