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SerialUncoloredCollator

cuttlefish_rs::discontinuity

Struct SerialUncoloredCollator

pub struct SerialUncoloredCollator;

Expand description

Maps expanded path information and reduces maximal-unitig coordinate buckets.

Despite the historical name, this collator handles both uncolored and colored external inputs.

Implementations§

impl SerialUncoloredCollator

pub fn collate<const K: usize>( inputs: &DiscontinuityInputs<K>, expansion: &SerialExpansion<K>, ) -> SerialCollation

pub fn collate_with_threads<const K: usize>( inputs: &DiscontinuityInputs<K>, expansion: &SerialExpansion<K>, threads: usize, ) -> SerialCollation

pub fn collate_path_info_only_with_threads<const K: usize>( inputs: &DiscontinuityInputs<K>, expansion: &SerialExpansion<K>, threads: usize, ) -> SerialCollation

pub fn collate_stitched_with_threads<const K: usize>( inputs: &DiscontinuityInputs<K>, threads: usize, ) -> SerialCollation

pub fn collate_stitched_with_threads_in_dir<const K: usize>( inputs: &DiscontinuityInputs<K>, threads: usize, coord_dir: &Path, ) -> Result<SerialCollation, SerialCollationError>

pub fn collate_stitched_to_fasta_with_threads_in_dir<const K: usize>( inputs: &DiscontinuityInputs<K>, threads: usize, coord_dir: &Path, final_dir: &Path, output_path: &Path, ) -> Result<SerialCollationStats, SerialCollationError>

pub fn collate_external_stitched_to_fasta_with_threads_in_dir<const K: usize>( inputs: &mut ExternalDiscontinuityInputs<K>, threads: usize, coord_dir: &Path, final_dir: &Path, output_path: &Path, ) -> Result<SerialCollationStats, SerialCollationError>

Auto Trait Implementations§

impl Freeze for SerialUncoloredCollator

impl RefUnwindSafe for SerialUncoloredCollator

impl Send for SerialUncoloredCollator

impl Sync for SerialUncoloredCollator

impl Unpin for SerialUncoloredCollator

impl UnsafeUnpin for SerialUncoloredCollator

impl UnwindSafe for SerialUncoloredCollator

Blanket Implementations§

impl<T> Any for T
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impl<T, U> Into<U> for T
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