zipora 3.1.7

High-performance Rust implementation providing advanced data structures and compression algorithms with memory safety guarantees. Features LRU page cache, sophisticated caching layer, fiber-based concurrency, real-time compression, secure memory pools, SIMD optimizations, and complete C FFI for migration from C++.
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
//! RankSelectMixedIL256: Two-dimension interleaved rank/select with 256-bit blocks.
//!
//! Stores TWO independent bitvectors interleaved in the same structure.
//! Each 256-bit "line" contains rank caches + bits for BOTH dimensions.
//!
//! Use case: NestLoudsTrie stores LOUDS structure bits and label/link bits
//! together, enabling cache-friendly access to both in a single cache line fetch.
//!
//! Layout per line (80 bytes):
//! ```text
//! [dim0: rlev1(4) + rlev2(4) + bit64(32)] = 40 bytes
//! [dim1: rlev1(4) + rlev2(4) + bit64(32)] = 40 bytes
//! ```

use super::RankSelectOps;
use crate::error::{Result, ZiporaError};
use crate::succinct::BitVector;

const LINE_BITS: usize = 256;
const WORDS_PER_LINE: usize = 4;

/// Single dimension within a mixed line.
#[derive(Debug, Clone, Copy)]
#[repr(C)]
struct DimLine {
    rlev1: u32,
    rlev2: [u8; 4],
    bit64: [u64; 4],
}

impl DimLine {
    fn new() -> Self {
        Self {
            rlev1: 0,
            rlev2: [0; 4],
            bit64: [0; 4],
        }
    }

    #[inline(always)]
    fn rank1_within(&self, bit_offset: usize) -> usize {
        let word_idx = bit_offset / 64;
        let bit_in_word = bit_offset % 64;
        let mut rank = self.rlev2[word_idx] as usize;
        if bit_in_word > 0 {
            let mask = (1u64 << bit_in_word) - 1;
            rank += (self.bit64[word_idx] & mask).count_ones() as usize;
        }
        rank
    }
}

/// Mixed interleaved line: two dimensions per block.
#[derive(Debug, Clone, Copy)]
#[repr(C)]
struct MixedLine {
    dim: [DimLine; 2],
}

impl MixedLine {
    fn new() -> Self {
        Self {
            dim: [DimLine::new(), DimLine::new()],
        }
    }
}

/// Two-dimension interleaved rank/select with 256-bit blocks.
///
/// Access individual dimensions via `dim0()` and `dim1()` views,
/// or use `rank1_dim`/`select1_dim` directly.
pub struct RankSelectMixedIL256 {
    lines: Vec<MixedLine>,
    size: [usize; 2], // bit count per dimension
    max_rank1: [usize; 2],
}

/// Read-only view of one dimension of a MixedIL256.
pub struct MixedDimView<'a> {
    parent: &'a RankSelectMixedIL256,
    dim: usize,
}

impl RankSelectMixedIL256 {
    /// Build from two BitVectors (one per dimension).
    pub fn new(bv0: BitVector, bv1: BitVector) -> Result<Self> {
        let size0 = bv0.len();
        let size1 = bv1.len();
        let max_size = size0.max(size1);
        let nlines = max_size.div_ceil(LINE_BITS);

        let blocks0 = bv0.blocks();
        let blocks1 = bv1.blocks();

        let mut lines = Vec::with_capacity(nlines);
        let mut cum_rank = [0u32; 2];

        for i in 0..nlines {
            let mut ml = MixedLine::new();
            for d in 0..2 {
                ml.dim[d].rlev1 = cum_rank[d];
                let blocks = if d == 0 { blocks0 } else { blocks1 };
                let dim_size = if d == 0 { size0 } else { size1 };
                let mut r = 0u32;
                for j in 0..WORDS_PER_LINE {
                    ml.dim[d].rlev2[j] = r as u8;
                    let word_idx = i * WORDS_PER_LINE + j;
                    let word = if word_idx < blocks.len() {
                        blocks[word_idx]
                    } else {
                        0
                    };
                    // Mask off bits beyond dimension size
                    let global_bit = i * LINE_BITS + j * 64;
                    let effective_word = if global_bit + 64 > dim_size && global_bit < dim_size {
                        let valid_bits = dim_size - global_bit;
                        word & ((1u64 << valid_bits) - 1)
                    } else if global_bit >= dim_size {
                        0
                    } else {
                        word
                    };
                    ml.dim[d].bit64[j] = effective_word;
                    r += effective_word.count_ones();
                }
                cum_rank[d] += r;
            }
            lines.push(ml);
        }

        Ok(Self {
            lines,
            size: [size0, size1],
            max_rank1: [cum_rank[0] as usize, cum_rank[1] as usize],
        })
    }

    /// Get a read-only view of dimension 0.
    #[inline]
    pub fn dim0(&self) -> MixedDimView<'_> {
        MixedDimView {
            parent: self,
            dim: 0,
        }
    }
    /// Get a read-only view of dimension 1.
    #[inline]
    pub fn dim1(&self) -> MixedDimView<'_> {
        MixedDimView {
            parent: self,
            dim: 1,
        }
    }

    /// rank1 for a specific dimension.
    #[inline]
    pub fn rank1_dim(&self, dim: usize, pos: usize) -> usize {
        assert!(dim < 2);
        assert!(pos <= self.size[dim]);
        if pos == 0 {
            return 0;
        }
        let line_idx = pos / LINE_BITS;
        let bit_in_line = pos % LINE_BITS;
        let dl = &self.lines[line_idx].dim[dim];
        dl.rlev1 as usize + dl.rank1_within(bit_in_line)
    }

    /// rank0 for a specific dimension.
    #[inline]
    pub fn rank0_dim(&self, dim: usize, pos: usize) -> usize {
        pos - self.rank1_dim(dim, pos)
    }

    /// select1 for a specific dimension.
    #[inline]
    pub fn select1_dim(&self, dim: usize, k: usize) -> Result<usize> {
        assert!(dim < 2);
        if k >= self.max_rank1[dim] {
            return Err(ZiporaError::invalid_data("select1 out of range"));
        }
        // Binary search over lines
        let nlines = self.lines.len();
        let mut lo = 0usize;
        let mut hi = nlines;
        while lo < hi {
            let mid = (lo + hi) / 2;
            if (self.lines[mid].dim[dim].rlev1 as usize) <= k {
                lo = mid + 1;
            } else {
                hi = mid;
            }
        }
        let block = lo - 1;
        let dl = &self.lines[block].dim[dim];
        let base = dl.rlev1 as usize;
        let remaining = k - base;
        let base_bitpos = block * LINE_BITS;

        for j in (0..WORDS_PER_LINE).rev() {
            if remaining >= dl.rlev2[j] as usize {
                let in_word = remaining - dl.rlev2[j] as usize;
                let word = dl.bit64[j];
                return Ok(base_bitpos + j * 64 + select_in_word(word, in_word));
            }
        }
        Err(ZiporaError::invalid_data("select1 internal error"))
    }

    /// Get bit value for a specific dimension.
    #[inline]
    pub fn get_dim(&self, dim: usize, index: usize) -> Option<bool> {
        if index >= self.size[dim] {
            return None;
        }
        let line_idx = index / LINE_BITS;
        let word_idx = (index % LINE_BITS) / 64;
        let bit_idx = index % 64;
        Some((self.lines[line_idx].dim[dim].bit64[word_idx] >> bit_idx) & 1 == 1)
    }

    #[inline]
    pub fn size_dim(&self, dim: usize) -> usize {
        self.size[dim]
    }
    pub fn max_rank1_dim(&self, dim: usize) -> usize {
        self.max_rank1[dim]
    }

    #[inline]
    pub fn mem_size(&self) -> usize {
        self.lines.len() * std::mem::size_of::<MixedLine>()
    }
}

/// View of one dimension — implements RankSelectOps.
impl RankSelectOps for MixedDimView<'_> {
    #[inline]
    fn rank1(&self, pos: usize) -> usize {
        self.parent.rank1_dim(self.dim, pos)
    }
    #[inline]
    fn rank0(&self, pos: usize) -> usize {
        self.parent.rank0_dim(self.dim, pos)
    }
    fn select1(&self, k: usize) -> Result<usize> {
        self.parent.select1_dim(self.dim, k)
    }
    #[inline]
    fn select0(&self, _k: usize) -> Result<usize> {
        Err(ZiporaError::invalid_data(
            "select0 not yet implemented for mixed",
        ))
    }
    fn len(&self) -> usize {
        self.parent.size[self.dim]
    }
    fn count_ones(&self) -> usize {
        self.parent.max_rank1[self.dim]
    }
    fn get(&self, index: usize) -> Option<bool> {
        self.parent.get_dim(self.dim, index)
    }
    fn space_overhead_percent(&self) -> f64 {
        if self.parent.size[self.dim] == 0 {
            return 0.0;
        }
        let bit_bytes = self.parent.size[self.dim].div_ceil(8);
        let cache_bytes = self.parent.lines.len() * 8; // rank cache portion
        (cache_bytes as f64 / bit_bytes as f64) * 100.0
    }
}

/// Select k-th set bit within a u64 word.
/// Delegates to centralized AMD-safe implementation in algorithms::bit_ops.
#[inline]
fn select_in_word(word: u64, k: usize) -> usize {
    crate::algorithms::bit_ops::select_in_word(word, k)
}

impl std::fmt::Debug for RankSelectMixedIL256 {
    fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
        f.debug_struct("RankSelectMixedIL256")
            .field("size", &self.size)
            .field("max_rank1", &self.max_rank1)
            .field("lines", &self.lines.len())
            .finish()
    }
}

#[cfg(test)]
mod tests {
    use super::*;

    fn make_bv(pattern: &[bool]) -> BitVector {
        let mut bv = BitVector::new();
        for &b in pattern {
            bv.push(b).unwrap();
        }
        bv
    }

    #[test]
    fn test_basic_two_dims() {
        let bv0 = make_bv(&[true, false, true, false, true]); // 3 ones
        let bv1 = make_bv(&[false, true, false, true, false]); // 2 ones
        let rs = RankSelectMixedIL256::new(bv0, bv1).unwrap();

        // Dimension 0
        assert_eq!(rs.dim0().len(), 5);
        assert_eq!(rs.dim0().count_ones(), 3);
        assert_eq!(rs.dim0().rank1(1), 1);
        assert_eq!(rs.dim0().rank1(5), 3);
        assert_eq!(rs.dim0().select1(0).unwrap(), 0);
        assert_eq!(rs.dim0().select1(2).unwrap(), 4);

        // Dimension 1
        assert_eq!(rs.dim1().len(), 5);
        assert_eq!(rs.dim1().count_ones(), 2);
        assert_eq!(rs.dim1().rank1(2), 1);
        assert_eq!(rs.dim1().select1(0).unwrap(), 1);
        assert_eq!(rs.dim1().select1(1).unwrap(), 3);
    }

    #[test]
    fn test_different_sizes() {
        let bv0 = make_bv(&[true; 100]);
        let bv1 = make_bv(&[false; 50]);
        let rs = RankSelectMixedIL256::new(bv0, bv1).unwrap();

        assert_eq!(rs.dim0().len(), 100);
        assert_eq!(rs.dim1().len(), 50);
        assert_eq!(rs.dim0().count_ones(), 100);
        assert_eq!(rs.dim1().count_ones(), 0);
    }

    #[test]
    fn test_invariant() {
        let p0: Vec<bool> = (0..1000).map(|i| i % 5 == 0).collect();
        let p1: Vec<bool> = (0..1000).map(|i| i % 7 == 0).collect();
        let rs = RankSelectMixedIL256::new(make_bv(&p0), make_bv(&p1)).unwrap();

        for i in 0..=1000 {
            assert_eq!(
                rs.dim0().rank0(i) + rs.dim0().rank1(i),
                i,
                "dim0 invariant at {}",
                i
            );
            assert_eq!(
                rs.dim1().rank0(i) + rs.dim1().rank1(i),
                i,
                "dim1 invariant at {}",
                i
            );
        }
    }

    #[test]
    fn test_roundtrip() {
        let p0: Vec<bool> = (0..500).map(|i| i % 3 == 0).collect();
        let p1: Vec<bool> = (0..500).map(|i| i % 11 == 0).collect();
        let rs = RankSelectMixedIL256::new(make_bv(&p0), make_bv(&p1)).unwrap();

        for k in 0..rs.dim0().count_ones() {
            let pos = rs.dim0().select1(k).unwrap();
            assert_eq!(rs.dim0().get(pos), Some(true));
        }
        for k in 0..rs.dim1().count_ones() {
            let pos = rs.dim1().select1(k).unwrap();
            assert_eq!(rs.dim1().get(pos), Some(true));
        }
    }

    #[test]
    fn test_get() {
        let bv0 = make_bv(&[true, false, true]);
        let bv1 = make_bv(&[false, true, false]);
        let rs = RankSelectMixedIL256::new(bv0, bv1).unwrap();

        assert_eq!(rs.get_dim(0, 0), Some(true));
        assert_eq!(rs.get_dim(0, 1), Some(false));
        assert_eq!(rs.get_dim(1, 0), Some(false));
        assert_eq!(rs.get_dim(1, 1), Some(true));
        assert_eq!(rs.get_dim(0, 3), None);
    }

    #[test]
    fn test_large() {
        let p0: Vec<bool> = (0..5000).map(|i| i % 13 == 0).collect();
        let p1: Vec<bool> = (0..5000).map(|i| i % 17 == 0).collect();
        let rs = RankSelectMixedIL256::new(make_bv(&p0), make_bv(&p1)).unwrap();

        let e0 = (0..5000).filter(|i| i % 13 == 0).count();
        let e1 = (0..5000).filter(|i| i % 17 == 0).count();
        assert_eq!(rs.dim0().count_ones(), e0);
        assert_eq!(rs.dim1().count_ones(), e1);

        assert_eq!(rs.dim0().select1(0).unwrap(), 0);
        assert_eq!(rs.dim0().select1(1).unwrap(), 13);
        assert_eq!(rs.dim1().select1(0).unwrap(), 0);
        assert_eq!(rs.dim1().select1(1).unwrap(), 17);
    }

    #[test]
    fn test_empty() {
        let rs = RankSelectMixedIL256::new(make_bv(&[]), make_bv(&[])).unwrap();
        assert_eq!(rs.dim0().len(), 0);
        assert_eq!(rs.dim1().len(), 0);
        assert_eq!(rs.dim0().rank1(0), 0);
        assert_eq!(rs.dim1().rank1(0), 0);
    }

    #[test]
    fn test_all_zeros_all_ones() {
        let rs = RankSelectMixedIL256::new(make_bv(&vec![false; 100]), make_bv(&vec![true; 100]))
            .unwrap();
        assert_eq!(rs.dim0().count_ones(), 0);
        assert_eq!(rs.dim1().count_ones(), 100);
        assert!(rs.dim0().select1(0).is_err());
        assert_eq!(rs.dim1().select1(50).unwrap(), 50);
    }

    #[test]
    fn test_crossing_block_boundary() {
        // Blocks are 256 bits; put bits near boundaries
        let mut p0 = vec![false; 300];
        p0[0] = true;
        p0[255] = true;
        p0[256] = true;
        p0[299] = true;
        let rs = RankSelectMixedIL256::new(make_bv(&p0), make_bv(&vec![true; 300])).unwrap();
        assert_eq!(rs.dim0().count_ones(), 4);
        assert_eq!(rs.dim0().select1(0).unwrap(), 0);
        assert_eq!(rs.dim0().select1(1).unwrap(), 255);
        assert_eq!(rs.dim0().select1(2).unwrap(), 256);
        assert_eq!(rs.dim0().select1(3).unwrap(), 299);
    }
}