yacrd 0.4.1

Using all-against-all read mapping, yacrd performs: computation of pile-up coverage for each read and detection of chimeras
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62

# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g. crates.io) dependencies
#
# If you believe there's an error in this file please file an
# issue against the rust-lang/cargo repository. If you're
# editing this file be aware that the upstream Cargo.toml
# will likely look very different (and much more reasonable)

[package]
name = "yacrd"
version = "0.4.1"
authors = ["Pierre Marijon <pierre.marijon@inria.fr>"]
exclude = ["image/*", "validation/*", "tests/*"]
description = "Using all-against-all read mapping, yacrd performs: computation of pile-up coverage for each read and detection of chimeras"
homepage = "https://github.com/natir/yacrd"
readme = "Readme.md"
keywords = ["bioinformatics", "chimera", "long-read"]
license = "MIT"
repository = "https://github.com/natir/yacrd"

[[bin]]
name = "yacrd"
path = "src/main.rs"
[dependencies.bio]
version = "0.21"

[dependencies.bzip2]
version = "0.3.3"

[dependencies.clap]
version = "2.31.2"

[dependencies.csv]
version = "1"

[dependencies.enum_primitive]
version = "0.1.1"

[dependencies.flate2]
version = "1.0"

[dependencies.lazy_static]
version = "1.0"

[dependencies.serde]
version = "1.0"

[dependencies.serde_derive]
version = "1.0"

[dependencies.serde_json]
version = "1.0"

[dependencies.xz2]
version = "0.1"
[badges.travis-ci]
branch = "master"
repository = "natir/yacrd"