wdl-analysis 0.26.0

Analysis of Workflow Description Language (WDL) documents.
Documentation
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
1133
1134
1135
1136
1137
1138
1139
1140
1141
1142
1143
1144
1145
1146
1147
1148
1149
1150
1151
1152
1153
1154
1155
1156
1157
1158
1159
1160
1161
1162
1163
1164
1165
1166
1167
1168
1169
1170
1171
1172
1173
1174
1175
1176
1177
1178
1179
1180
1181
1182
1183
1184
1185
1186
1187
1188
1189
1190
1191
1192
1193
1194
1195
1196
1197
1198
1199
1200
1201
1202
1203
1204
1205
1206
1207
1208
1209
1210
1211
1212
1213
1214
1215
1216
1217
1218
1219
1220
1221
1222
1223
1224
1225
1226
1227
1228
1229
1230
1231
1232
1233
1234
1235
1236
1237
1238
1239
1240
1241
1242
1243
1244
1245
1246
1247
1248
1249
1250
1251
1252
1253
1254
1255
1256
1257
1258
1259
1260
1261
1262
1263
1264
1265
1266
1267
1268
1269
1270
1271
1272
1273
1274
1275
1276
1277
1278
1279
1280
1281
1282
1283
1284
1285
1286
1287
1288
1289
1290
1291
1292
1293
1294
1295
1296
1297
1298
1299
1300
1301
1302
1303
1304
1305
//! Implementation of analysis rules.

pub mod util;

use std::collections::HashMap;
use std::sync::LazyLock;

use wdl_ast::Severity;
use wdl_grammar::SyntaxKind;

use crate::RuleMap;

/// All rule IDs sorted alphabetically.
pub static ALL_RULE_IDS: LazyLock<Vec<String>> = LazyLock::new(|| {
    let mut ids: Vec<String> = rules().iter().map(|r| r.id().to_string()).collect();
    ids.sort();
    ids
});

/// All rules and their exceptable nodes.
pub(crate) static RULE_MAP: LazyLock<RuleMap> = LazyLock::new(|| {
    let rules = rules();
    let mut map = HashMap::with_capacity(rules.len());
    for rule in rules {
        map.insert(String::from(rule.id()), rule.exceptable_nodes());
    }
    map
});

/// A labeled WDL code snippet.
#[derive(Copy, Clone, Debug)]
pub struct LabeledSnippet {
    /// A label for the snippet.
    pub label: Option<&'static str>,
    /// A WDL code snippet.
    pub snippet: &'static str,
}

/// A lint rule example.
#[derive(Copy, Clone, Debug)]
pub struct Example {
    /// A snippet that will trigger the target lint rule.
    pub negative: LabeledSnippet,
    /// A revision of the negative snippet that will no longer trigger the rule.
    pub revised: Option<LabeledSnippet>,
}

/// A trait implemented by analysis rules.
pub trait Rule: Send + Sync {
    /// The unique identifier for the rule.
    ///
    /// The identifier is required to be pascal case and it is the identifier by
    /// which a rule is excepted or denied.
    fn id(&self) -> &'static str;

    /// A short, single sentence description of the rule.
    fn description(&self) -> &'static str;

    /// Get the long-form explanation of the rule.
    fn explanation(&self) -> &'static str;

    /// Get a list of examples that would trigger this rule.
    fn examples(&self) -> &'static [Example];

    /// Gets the nodes that are exceptable for this rule.
    ///
    /// If `None` is returned, all nodes are exceptable.
    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]>;

    /// Denies the rule.
    ///
    /// Denying the rule treats any diagnostics it emits as an error.
    fn deny(&mut self);

    /// Gets the severity of the rule.
    fn severity(&self) -> Severity;
}

/// Gets the list of all analysis rules.
pub fn rules() -> Vec<Box<dyn Rule>> {
    let rules: Vec<Box<dyn Rule>> = vec![
        Box::<UnusedImportRule>::default(),
        Box::<UnusedInputRule>::default(),
        Box::<UnusedDeclarationRule>::default(),
        Box::<UnusedCallRule>::default(),
        Box::<UnnecessaryFunctionCall>::default(),
        Box::<UsingFallbackVersion>::default(),
        Box::<MisleadingDeclarationOrderRule>::default(),
        Box::<MeaninglessLintDirective>::default(),
        Box::<KnownRulesRule>::default(),
        Box::<ExceptDirectiveValidRule>::default(),
        Box::<CommandSectionIndentationRule>::default(),
        Box::<DeprecatedObjectRule>::default(),
        Box::<DeprecatedPlaceholderRule>::default(),
        Box::<DeprecatedRuntimeSectionRule>::default(),
    ];

    // Ensure all the rule ids are unique and pascal case
    #[cfg(debug_assertions)]
    {
        use convert_case::Case;
        use convert_case::Casing;
        let mut set = std::collections::HashSet::new();
        for r in rules.iter() {
            if r.id().to_case(Case::Pascal) != r.id() {
                panic!("analysis rule id `{id}` is not pascal case", id = r.id());
            }

            if !set.insert(r.id()) {
                panic!("duplicate rule id `{id}`", id = r.id());
            }
        }
    }

    rules
}

/// Represents the unused import rule.
#[derive(Debug, Clone, Copy)]
pub struct UnusedImportRule(Severity);

impl UnusedImportRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::ImportStatementNode,
    ]);
    /// The rule identifier for unused import warnings.
    pub const ID: &'static str = "UnusedImport";

    /// Creates a new unused import rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UnusedImportRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UnusedImportRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that import namespaces are used in the importing document."
    }

    fn explanation(&self) -> &'static str {
        "Imported WDL documents should be used in the document that imports them. Unused imports \
         impact parsing and evaluation performance."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.3

import "bar.wdl"
import "foo.wdl" as used

workflow example {
    call used.test
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider removing the import entirely"),
                snippet: r#"version 1.3

import "foo.wdl" as used

workflow example {
    call used.test
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the unused input rule.
#[derive(Debug, Clone, Copy)]
pub struct UnusedInputRule(Severity);

impl UnusedInputRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::BoundDeclNode,
        SyntaxKind::UnboundDeclNode,
    ]);
    /// The rule identifier for unused input warnings.
    pub const ID: &str = "UnusedInput";

    /// Creates a new unused input rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UnusedInputRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UnusedInputRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that task or workspace inputs are used within the declaring task or workspace."
    }

    fn explanation(&self) -> &'static str {
        "Unused inputs degrade evaluation performance and reduce the clarity of the code. Unused \
         file inputs in tasks can also cause unnecessary file localizations."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    input {
        String unused
    }
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider removing the input entirely"),
                snippet: r#"version 1.2

workflow example {
    input {
    }
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the unused declaration rule.
#[derive(Debug, Clone, Copy)]
pub struct UnusedDeclarationRule(Severity);

impl UnusedDeclarationRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::BoundDeclNode,
        SyntaxKind::UnboundDeclNode,
    ]);
    /// The rule identifier for unused declaration warnings.
    pub const ID: &str = "UnusedDeclaration";

    /// Creates a new unused declaration rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UnusedDeclarationRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UnusedDeclarationRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that private declarations in tasks or workspaces are used within the declaring \
         task or workspace."
    }

    fn explanation(&self) -> &'static str {
        "Unused private declarations degrade evaluation performance and reduce the clarity of the \
         code."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    String unused = "this will produce a warning"
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider removing the declaration entirely"),
                snippet: r#"version 1.2

workflow example {
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the unused call rule.
#[derive(Debug, Clone, Copy)]
pub struct UnusedCallRule(Severity);

impl UnusedCallRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::CallStatementNode,
    ]);
    /// The rule identifier for unused call warnings.
    pub const ID: &str = "UnusedCall";

    /// Creates a new unused call rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UnusedCallRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UnusedCallRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that outputs of a call statement are used in the declaring workflow."
    }

    fn explanation(&self) -> &'static str {
        "Unused calls may cause unnecessary consumption of compute resources."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    # The output of `do_work` is never used
    call do_work
}

task do_work {
    command <<<
    >>>

    output {
        Int x = 0
    }
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider removing the call entirely"),
                snippet: r#"version 1.2

workflow example {
}

task do_work {
    command <<<
    >>>

    output {
        Int x = 0
    }
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the unnecessary call rule.
#[derive(Debug, Clone, Copy)]
pub struct UnnecessaryFunctionCall(Severity);

impl UnnecessaryFunctionCall {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::BoundDeclNode,
    ]);
    /// The rule identifier for unnecessary function call warnings.
    pub const ID: &str = "UnnecessaryFunctionCall";

    /// Creates a new unnecessary function call rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UnnecessaryFunctionCall {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UnnecessaryFunctionCall {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that function calls are necessary."
    }

    fn explanation(&self) -> &'static str {
        "Unnecessary function calls may impact evaluation performance."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    # Calls to `defined` on values that are statically
    # known to be non-None are unnecessary.
    Boolean exists = defined("hello")
}
"#,
            },
            revised: None,
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the using fallback version rule.
#[derive(Debug, Clone, Copy)]
pub struct UsingFallbackVersion(Severity);

impl UsingFallbackVersion {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> =
        Some(&[SyntaxKind::VersionStatementNode]);
    /// The rule identifier for unsupported version fallback warnings.
    pub const ID: &str = "UsingFallbackVersion";

    /// Creates a new using fallback version rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for UsingFallbackVersion {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for UsingFallbackVersion {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Warns if interpretation of a document with an unsupported version falls back to a default."
    }

    fn explanation(&self) -> &'static str {
        "A document with an unsupported version may have unpredictable behavior if interpreted as \
         a different version."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"# Not a valid version. If a fallback version is configured,
# the document will be interpreted as that version.
version development

workflow example {
}
"#,
            },
            revised: None,
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the meaningless lint directive rule.
#[derive(Debug, Clone, Copy)]
pub struct MeaninglessLintDirective(Severity);

impl MeaninglessLintDirective {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = None;
    /// The rule identifier for meaningless lint directive warnings.
    pub const ID: &str = "MeaninglessLintDirective";

    /// Creates a new meaningless lint directive rule.
    pub fn new() -> Self {
        Self(Severity::Note)
    }
}

impl Default for MeaninglessLintDirective {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for MeaninglessLintDirective {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Warns if an `#@ except:` comment doesn't actually suppress a lint."
    }

    fn explanation(&self) -> &'static str {
        "Unused `#@ except:` comments are likely leftovers of refactoring or debugging, and can \
         reduce the clarity of the code. It is best to remove them."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.3

task do_work {
    command <<<
        echo "Lots of hard work!"
    >>>

    output {
        String result = read_string(stdout())
    }
}

# We except `UnusedCall` unnecessarily.
workflow calculate {
    #@ except: UnusedCall
    call do_work

    output {
        # We're using the result here!
        String result = do_work.result
    }
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider removing the unused exception"),
                snippet: r#"version 1.3

task do_work {
    command <<<
        echo "Lots of hard work!"
    >>>

    output {
        String result = read_string(stdout())
    }
}

workflow calculate {
    call do_work

    output {
        String result = do_work.result
    }
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Represents the using misleading declaration order rule.
#[derive(Debug, Clone, Copy)]
pub struct MisleadingDeclarationOrderRule(Severity);

impl MisleadingDeclarationOrderRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> =
        Some(&[SyntaxKind::TaskDefinitionNode, SyntaxKind::BoundDeclNode]);
    /// The rule identifier for misleading declaration order warnings.
    pub const ID: &str = "MisleadingDeclarationOrder";

    /// Creates a new misleading declaration order rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for MisleadingDeclarationOrderRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for MisleadingDeclarationOrderRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Warns when a variable declaration is placed after a `command` block."
    }

    fn explanation(&self) -> &'static str {
        "WDL tasks are evaluated based on their dependency graph, not top-to-bottom. Variable \
         declarations that appear after `command` sections are visually misleading, as they will \
         still be evaluated _before_ the command is executed."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

task greet {
    String greeting = "Hello"

    command <<<
        echo "~{greeting}, ~{name}!"
    >>>

    String name = "World"
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

task greet {
    String greeting = "Hello"
    String name = "World"

    command <<<
        echo "~{greeting}, ~{name}!"
    >>>
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects unknown rules within lint directives.
#[derive(Debug, Clone, Copy)]
pub struct KnownRulesRule(Severity);

impl KnownRulesRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> =
        Some(&[SyntaxKind::VersionStatementNode]);
    /// The rule identifier for known rules warnings.
    pub const ID: &str = "KnownRules";

    /// Creates a new "known rules" rule.
    pub fn new() -> Self {
        Self(Severity::Note)
    }
}

impl Default for KnownRulesRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for KnownRulesRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures only known rules are used in `except` directives."
    }

    fn explanation(&self) -> &'static str {
        "When writing WDL, `except` directives are used to suppress certain rules. If a rule is \
         unknown, nothing will be suppressed. This rule flags unknown rules as they are often \
         mistakes."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"#@ except: LintThatDoesNotExist
version 1.2

workflow example {
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects improperly placed `except` directives.
#[derive(Debug, Clone, Copy)]
pub struct ExceptDirectiveValidRule(Severity);

impl ExceptDirectiveValidRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> =
        Some(&[SyntaxKind::VersionStatementNode]);
    /// The rule identifier for except directive warnings.
    pub const ID: &str = "ExceptDirectiveValid";

    /// Creates a new "except directive valid" rule.
    pub fn new() -> Self {
        Self(Severity::Note)
    }
}

impl Default for ExceptDirectiveValidRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for ExceptDirectiveValidRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures `except` directives are placed correctly to have the intended effect."
    }

    fn explanation(&self) -> &'static str {
        "When writing WDL, `except` directives are used to suppress certain rules. If an `except` \
         directive is misplaced, it will have no effect. This rule flags misplaced `except` \
         directives to ensure they are in the correct location."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.3

# UsingFallbackVersion exceptions aren't valid
# in this context
#@ except: UsingFallbackVersion
workflow example {
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"#@ except: UsingFallbackVersion
version 1.3

workflow example {
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects mixed indentation within command sections.
#[derive(Debug, Clone, Copy)]
pub struct CommandSectionIndentationRule(Severity);

impl CommandSectionIndentationRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::CommandSectionNode,
    ]);
    /// The rule identifier for mixed command section indentation warnings.
    pub const ID: &str = "CommandSectionIndentation";

    /// Creates a new "mixed command section indentation" rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for CommandSectionIndentationRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for CommandSectionIndentationRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures consistent indentation (no mixed spaces/tabs) within command sections."
    }

    fn explanation(&self) -> &'static str {
        "Mixing indentation (tab and space) characters within the command line causes leading \
         whitespace stripping to be skipped. Commands may be whitespace sensitive, and skipping \
         the whitespace stripping step may cause unexpected behavior."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.3

task say_greetings {
    input {
        String name
    }

    command <<<
        # this line is prefixed with tabs
		echo "Hello, ~{name}!"
        # this line is prefixed with spaces
        echo "Goodbye, ~{name}!"
    >>>
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"version 1.3

task say_greetings {
    input {
        String name
    }

    command <<<
        # this line is prefixed with spaces
        echo "Hello, ~{name}!"
        # this line is prefixed with spaces
        echo "Goodbye, ~{name}!"
    >>>
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects the use of the deprecated `Object` types.
#[derive(Debug, Clone, Copy)]
pub struct DeprecatedObjectRule(Severity);

impl DeprecatedObjectRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::BoundDeclNode,
        SyntaxKind::UnboundDeclNode,
    ]);
    /// The rule identifier for deprecated object warnings.
    pub const ID: &str = "DeprecatedObject";

    /// Creates a new "deprecated object" rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for DeprecatedObjectRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for DeprecatedObjectRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that the deprecated `Object` types are not used."
    }

    fn explanation(&self) -> &'static str {
        "WDL `Object` types are officially deprecated and will be removed in the next major WDL release.

`Object`s existed prior to better containers, such as `Map`s and `Struct`s, being \
introduced into the language. Unfortunately, though these better alternatives did exist at \
the time of the v1.0 release, the type was not removed. It was later decided \
that `Object`s overlapped with `Map`s and `Struct`s in functionality, and the type was marked for removal.

See this issue for more details: <https://github.com/openwdl/wdl/pull/228>."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    Object person = object {
        name: "Jimmy",
        age: 55,
    }
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: Some("Consider switching to a `Struct` or `Map`"),
                snippet: r#"version 1.2

struct Person {
    String name
    Int age
}

workflow example {
    Person person = Person {
        name: "Jimmy",
        age: 55,
    }
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects the use of a deprecated placeholder option.
#[derive(Debug, Clone, Copy)]
pub struct DeprecatedPlaceholderRule(Severity);

impl DeprecatedPlaceholderRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::WorkflowDefinitionNode,
        SyntaxKind::PlaceholderNode,
    ]);
    /// The rule identifier for deprecated placeholder option warnings.
    pub const ID: &str = "DeprecatedPlaceholder";

    /// Creates a new "deprecated placeholder option" rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for DeprecatedPlaceholderRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for DeprecatedPlaceholderRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Ensures that deprecated expression placeholder options are not used."
    }

    fn explanation(&self) -> &'static str {
        "Expression placeholder options were deprecated in WDL v1.1 and will be removed in the \
         next major WDL version.

         - `sep` placeholder options should be replaced by the `sep()` standard library function.
         - `true/false` placeholder options should be replaced with `if`/`else` statements.
         - `default` placeholder options should be replaced by the `select_first()` standard \
         library function.
         - `${}` interpolation placeholders should be replaced by `~{}` interpolation placeholders.


This rule only evaluates for WDL V1 documents with a version of v1.1 or later, as this was the \
         version where the deprecation was introduced."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    Array[String] names = [
        "James",
        "Jimmy",
        "John",
    ]
    String names_separated = "~{sep="," names}"
    String names_interpolated = "${names_separated}"
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

workflow example {
    Array[String] names = [
        "James",
        "Jimmy",
        "John",
    ]
    String names_separated = "~{sep(",", names)}"
    String names_interpolated = "~{names_separated}"
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}

/// Detects deprecated `runtime` sections.
#[derive(Debug, Clone, Copy)]
pub struct DeprecatedRuntimeSectionRule(Severity);

impl DeprecatedRuntimeSectionRule {
    /// See [`Self::exceptable_nodes()`].
    pub const EXCEPTABLE_NODES: Option<&'static [SyntaxKind]> = Some(&[
        SyntaxKind::VersionStatementNode,
        SyntaxKind::TaskDefinitionNode,
        SyntaxKind::RuntimeSectionNode,
    ]);
    /// The rule identifier for deprecated runtime section warnings.
    pub const ID: &str = "DeprecatedRuntimeSection";

    /// Creates a new "deprecated runtime section" rule.
    pub fn new() -> Self {
        Self(Severity::Warning)
    }
}

impl Default for DeprecatedRuntimeSectionRule {
    fn default() -> Self {
        Self::new()
    }
}

impl Rule for DeprecatedRuntimeSectionRule {
    fn id(&self) -> &'static str {
        Self::ID
    }

    fn description(&self) -> &'static str {
        "Detects deprecated `runtime` sections."
    }

    fn explanation(&self) -> &'static str {
        "The `runtime` section is deprecated in WDL v1.2 and later. Replace it with a \
         `requirements` section."
    }

    fn examples(&self) -> &'static [Example] {
        &[Example {
            negative: LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

task say_hello {
    input {
        String name
    }

    command <<<
        echo "Hello, ~{name}!"
    >>>

    runtime {
        container: "ubuntu:latest"
    }
}
"#,
            },
            revised: Some(LabeledSnippet {
                label: None,
                snippet: r#"version 1.2

task say_hello {
    input {
        String name
    }

    command <<<
        echo "Hello, ~{name}!"
    >>>

    requirements {
        container: "ubuntu:latest"
    }
}
"#,
            }),
        }]
    }

    fn exceptable_nodes(&self) -> Option<&'static [wdl_ast::SyntaxKind]> {
        Self::EXCEPTABLE_NODES
    }

    fn deny(&mut self) {
        self.0 = Severity::Error;
    }

    fn severity(&self) -> Severity {
        self.0
    }
}