virolution 0.4.0

Agent-Based Simulation of Viral Evolution powered by a Sparse Haplotype Representation
Documentation 
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[[bin]]
name = "virolution"
path = "src/main.rs"

[build-dependencies.clap]
features = ["derive"]
version = "4.3.11"

[build-dependencies.clap_complete]
version = "4.3.2"

[dependencies.anyhow]
version = "1.0"

[dependencies.block-id]
version = "0.2.1"

[dependencies.cached]
version = "0.54.0"

[dependencies.clap]
features = ["derive"]
version = "4.3.11"

[dependencies.csv]
version = "1.2.2"

[dependencies.dashmap]
optional = true
version = "6.1.0"

[dependencies.derivative]
version = "2.2.0"

[dependencies.derive-where]
version = "1.2.7"

[dependencies.derive_more]
features = ["full"]
version = "1.0.0"

[dependencies.evalexpr]
version = "12.0.1"

[dependencies.indicatif]
version = "0.17.5"

[dependencies.itertools]
version = "0.13.0"

[dependencies.log]
version = "0.4.19"

[dependencies.npyz]
features = ["derive"]
version = "0.8.3"

[dependencies.parking_lot]
version = "0.12.1"

[dependencies.phf]
features = ["macros"]
version = "0.11.2"

[dependencies.rand]
features = ["alloc"]
version = "0.8.5"

[dependencies.rand_distr]
version = "0.4.3"

[dependencies.rayon]
optional = true
version = "1.7.0"

[dependencies.seq_io]
version = "0.3.1"

[dependencies.serde]
features = ["derive"]
version = "1.0.171"

[dependencies.serde_yaml]
version = "0.9.22"

[dependencies.simple-logging]
version = "2.0.2"

[dependencies.smallvec]
version = "1.13.2"

[dependencies.virolution-macros]
version = "0.1.0"

[dev-dependencies.serial_test]
version = "3.2.0"

[[example]]
name = "compartments"
path = "examples/compartments.rs"

[[example]]
name = "haplotype"
path = "examples/haplotype.rs"

[[example]]
name = "simulation"
path = "examples/simulation.rs"

[features]
default = []
parallel = ["rayon", "dashmap"]

[lib]
name = "virolution"
path = "src/lib.rs"

[package]
authors = ["nicolas ochsner <nicos.letters@gmail.com>"]
autobenches = false
autobins = false
autoexamples = false
autolib = false
autotests = false
build = "build.rs"
description = "Agent-Based Simulation of Viral Evolution powered by a Sparse Haplotype Representation"
edition = "2021"
keywords = ["simulation", "ecology", "virus-evolution"]
license = "MIT"
name = "virolution"
readme = "README.md"
repository = "https://github.com/sirno/virolution"
version = "0.4.0"

[profile.release]
codegen-units = 1
lto = true

[profile.release.package."*"]
codegen-units = 1
opt-level = 3