[dependencies.GSL]
version = "1"
[dependencies.anyhow]
version = "1.0"
[dependencies.approx]
version = "0.3"
[dependencies.askama]
version = "0.8"
[dependencies.bincode]
version = "1.2"
[dependencies.bio]
version = "0.32"
[dependencies.bio-types]
version = "0.7"
[dependencies.bv]
version = "0.11"
[dependencies.byteorder]
version = "1.3"
[dependencies.cached]
version = "0.9"
[dependencies.clap]
features = ["yaml", "color", "suggestions"]
version = "2"
[dependencies.counter]
version = "0.4"
[dependencies.crossbeam]
version = "0.7"
[dependencies.csv]
version = "1"
[dependencies.derefable]
version = "0.1"
[dependencies.derive-new]
version = "0.5"
[dependencies.derive_builder]
version = "0.9"
[dependencies.eval]
version = "0.4"
[dependencies.fern]
version = "0.5"
[dependencies.format-bytes]
version = "0.1"
[dependencies.futures]
version = "0.3"
[dependencies.getset]
version = "0.1.0"
[dependencies.half]
features = ["serde"]
version = "1.4"
[dependencies.itertools]
version = "0.8"
[dependencies.itertools-num]
version = "0.1"
[dependencies.lazy_static]
version = "1"
[dependencies.log]
version = "0.4"
[dependencies.lru_time_cache]
version = "0.10"
[dependencies.ndarray]
version = "0.13"
[dependencies.ordered-float]
version = "1"
[dependencies.pest]
version = "2"
[dependencies.pest_derive]
version = "2"
[dependencies.petgraph]
version = "0.4"
[dependencies.rand]
version = "0.7"
[dependencies.rayon]
version = "1"
[dependencies.regex]
version = "1"
[dependencies.rust-htslib]
version = "0.32"
[dependencies.rusty-machine]
version = "0.5"
[dependencies.serde]
version = "1"
[dependencies.serde_derive]
version = "1"
[dependencies.serde_json]
version = "1"
[dependencies.serde_yaml]
version = "0.8"
[dependencies.shrinkwraprs]
version = "0.2.3"
[dependencies.snafu]
version = "0.6"
[dependencies.statrs]
version = "0.11"
[dependencies.structopt]
version = "0.3"
[dependencies.strum]
version = "0.18"
[dependencies.strum_macros]
version = "0.18"
[dependencies.tempfile]
version = "3"
[dependencies.thiserror]
version = "1.0"
[dependencies.time]
version = "0.1"
[dependencies.typed-builder]
version = "0.7"
[dependencies.vec_map]
version = "0.8"
[dependencies.yaml-rust]
version = "0.4"
[dev-dependencies.env_logger]
version = "0.3"
[dev-dependencies.flate2]
version = "0.2"
[dev-dependencies.ftp]
version = "3.0"
[dev-dependencies.hyper]
version = "0.10"
[dev-dependencies.paste]
version = "1"
[dev-dependencies.serde_json]
version = "1"
[features]
default = []
gslv2 = ["GSL/v2"]
use-intrinsics = ["half/use-intrinsics"]
[package]
authors = ["Johannes Köster <johannes.koester@tu-dortmund.de>", "David Lähnemann <david.laehnemann@uni-duesseldorf.de>"]
description = "A library for calling of genomic variants using a latent variable model."
edition = "2018"
include = ["src/**/*", "Cargo.toml", "CHANGELOG.md", "README.md", "LICENSE", "templates/*"]
license = "GPL-3.0"
name = "varlociraptor"
readme = "README.md"
repository = "https://github.com/varlociraptor/varlociraptor"
version = "2.4.0"