varforge 0.2.0

Synthetic cancer sequencing test data generator
Documentation 
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# minimal.yaml — Simplest possible VarForge simulation
#
# Only the two required fields: a reference genome path and an output
# directory.  Everything else uses built-in defaults:
#
#   coverage:      30x
#   read_length:   150 bp
#   fragment mean: 300 bp  (sd: 50 bp)
#   mean quality:  Q36
#   output:        FASTQ + truth VCF + manifest
#
# Run:
#   varforge simulate --config examples/minimal.yaml

reference: ${reference}  # set with --set reference=/path/to/hg38.fa

output:
  directory: out/minimal