umi-core 1.1.0

Core library for umi-tools-rs — UMI extraction, deduplication, grouping, and counting
Documentation 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19

use thiserror::Error;

#[derive(Debug, Error)]
pub enum ExtractError {
    #[error("invalid barcode pattern: {0}")]
    InvalidPattern(String),

    #[error("read too short ({read_len} bp) for pattern ({pattern_len} bp)")]
    ReadTooShort { read_len: usize, pattern_len: usize },

    #[error("regex did not match read sequence")]
    RegexNoMatch,

    #[error("I/O error: {0}")]
    Io(#[from] std::io::Error),

    #[error("FASTQ parse error: {0}")]
    FastqParse(String),
}